Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1482 ATGGCTTCTTCCACCTACTCCAATTCTCCCTGCGCAGCCTGCAAGTTCCTCCGGCGAAAATGCCTACCGGACTGCGTTTTTGCCCCGTACTTCCCGCCCGAGGAGCCGCAGAAGTTTGCCAACGTCCACAAGATCTTCGGCGCCAGCAATGTCAGCAAGCTGCTGAACGAAGTCCAGCCACACCAACGCGAGGACGCCGTGAACTCGCTCGCCTACGAGGCCGAGGCAAGGATGAAAGACCCCGTCTACGGCTGCGTAGGCGCCATCTCCATCCTCCAGAGGCAAGTCATCAAGCTCCAGAAAGAACTCGACGCCACCAATGCGAATCTCATCCGCTATGCCTGCAATGAAATCCCTGCTCCGTCCCCGTCCCCGTCGTCGTCCTCACAATACGCTCGGAGGTCGTCGTCTACGAACCATGAGGGAAGCTCCTCCACCTCTAGCTATGGCCACTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATGGCCCTTGTGGAGATGGCCATGACAAAGGAGGA 528 57.01 MASSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACNEIPAPSPSPSSSSQYARRSSSTNHEGSSSTSSYGHYYSGLYFSPWSNNNGPCGDGHDKGG 176
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11184109 11184636 + MC08g1277 Mch8g1482 695103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1482 176 MobiDBLite consensus disorder prediction 120 147 - -
Mch8g1482 176 Coils Coil 89 109 - -
Mch8g1482 176 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 132 - -
Mch8g1482 176 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Mch8g1482 176 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g0754 Mch-Chr7:12166732 Mch8g1482 Mch-Chr8:11184109 2.89E-38 dispersed
Mch8g1482 Mch-Chr8:11184109 Mch8g2579 Mch-Chr8:28931017 2.03E-58 dispersed
Mch2g1427 Mch-Chr2:10525986 Mch8g1482 Mch-Chr8:11184109 1.38E-49 transposed
Mch4g2495 Mch-Chr4:25700778 Mch8g1482 Mch-Chr8:11184109 4.20E-47 transposed
Mch3g1425 Mch-Chr3:16660368 Mch8g1482 Mch-Chr8:11184109 3.00E-59 wgd
Mch4g2198 Mch-Chr4:23699283 Mch8g1482 Mch-Chr8:11184109 1.38E-69 wgd
Mch6g0126 Mch-Chr6:743224 Mch8g1482 Mch-Chr8:11184109 2.35E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43872 PF03195 LOB 2.40E-42 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1482 - - - 0.0