Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1526 ATGGAATCTGGTCGGTTCTTGTTCAACCCGCCGGCTACCCATGGCCAGATGCTTTACCTCGGCGGAGGAGGAAGAAGAATGATGAGCATGAGCATGCAGGAAAGCCCAAAGGGGCGGCCGTTTTTCAGATCACCCCACGATCTTTACGACGACGAATATTACGACGAGCTCTACCCCGAAAAGAAGCGCCGCCTTAGTCACGACCAGGTTCAAATGCTGGAGAAGAGCTTTGAGGAAGAGAACAAACTGGAGCCAGAGCGGAAGACTCAACTGGCCAAGAAACTGGGGCTGCAGCCAAGGCAGGTCGCCGTGTGGTACCAAAACCGCCGTGCTCGGTGGAAGATGAAGCAGCTCGAAAGGGACTACGATCTTCTCAAGGCTTCGTATGATTTGCTTCTCTCTAACTATGACTCCATTGTCAAAGAAAATGCAGTTCTTAAATCTGAGGTGGCTTCCCTAGCAGAGAAATTTCTAAACAAAGAGCTAACCGGAGAAGCGTCGGTTCCACATATAACATCCGAACCTCTTCTAGCAAACATTGTGCACGTCTCCTCCCCACGCTCTGGCAGAAAGGCCGAAGACCGTCTGAGTTCAGGGAGCAACAGCAGTGCACCGGTCGACGACAATTGCCCACAACTCATCGACAGTGGTGACTCTTACTTCCCCAGCAACGAATATCTGCAAATAGAGAATGACGACAAGAGCGACAACGGCTACAATTTCTTCTCCGATATGTTTGCAGCAACAAACCAACAGAATCAGGAGGGTGGTCATCCAGCTTGGTGGGCATGGCCATAG 798 51.13 MESGRFLFNPPATHGQMLYLGGGGRRMMSMSMQESPKGRPFFRSPHDLYDDEYYDELYPEKKRRLSHDQVQMLEKSFEEENKLEPERKTQLAKKLGLQPRQVAVWYQNRRARWKMKQLERDYDLLKASYDLLLSNYDSIVKENAVLKSEVASLAEKFLNKELTGEASVPHITSEPLLANIVHVSSPRSGRKAEDRLSSGSNSSAPVDDNCPQLIDSGDSYFPSNEYLQIENDDKSDNGYNFFSDMFAATNQQNQEGGHPAWWAWP 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11895404 11903019 + MC08g1313 Mch8g1526 695147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1526 265 PRINTS Lambda-repressor HTH signature 87 96 IPR000047 GO:0003677(InterPro)
Mch8g1526 265 PRINTS Lambda-repressor HTH signature 96 112 IPR000047 GO:0003677(InterPro)
Mch8g1526 265 Pfam Homeodomain 61 114 IPR001356 GO:0003677(InterPro)
Mch8g1526 265 Pfam Homeobox associated leucine zipper 116 156 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g1526 265 MobiDBLite consensus disorder prediction 188 209 - -
Mch8g1526 265 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 236 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Mch8g1526 265 FunFam homeobox-leucine zipper protein ATHB-6-like 64 110 - -
Mch8g1526 265 ProSiteProfiles 'Homeobox' domain profile. 56 116 IPR001356 GO:0003677(InterPro)
Mch8g1526 265 SUPERFAMILY Homeodomain-like 61 126 IPR009057 -
Mch8g1526 265 Gene3D - 59 122 - -
Mch8g1526 265 CDD homeodomain 61 114 IPR001356 GO:0003677(InterPro)
Mch8g1526 265 SMART HOX_1 59 120 IPR001356 GO:0003677(InterPro)
Mch8g1526 265 Coils Coil 108 135 - -
Mch8g1526 265 ProSitePatterns 'Homeobox' domain signature. 91 114 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch8g1526 265 MobiDBLite consensus disorder prediction 195 209 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0893 Mch-Chr1:12252681 Mch8g1526 Mch-Chr8:11895404 2.45E-25 dispersed
Mch3g1518 Mch-Chr3:17314286 Mch8g1526 Mch-Chr8:11895404 2.35E-33 dispersed
Mch4g2291 Mch-Chr4:24361379 Mch8g1526 Mch-Chr8:11895404 5.06E-26 dispersed
Mch5g0512 Mch-Chr5:3396868 Mch8g1526 Mch-Chr8:11895404 1.63E-21 dispersed
Mch5g1673 Mch-Chr5:17522683 Mch8g1526 Mch-Chr8:11895404 1.06E-22 dispersed
Mch8g1526 Mch-Chr8:11895404 Mch9g2152 Mch-Chr9:22247913 4.54E-25 dispersed
Mch4g2229 Mch-Chr4:23892032 Mch8g1526 Mch-Chr8:11895404 6.45E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43874 PF00046 Homeodomain 3.40E-17 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1526 K09338 - csv:101212142 394.43