Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1531 TTGTCGTTGGCTATTACACCACCAGTTGGCCGCTCCCCCATTTTGCTAGCACCACCAATTATATCCCCTTTTTCCTCCAAAACTTCTCATGTTCTTCTTTGTTCTTCCTCTCTCCATCAACCCTCTGTCTCTCATTTCTCGCCGGGGAACTCGACAAAACCCCGGAATCCGCCATGGAAGATGAATAGAATCATCCAATCGCCGGCGTCCAAGTTCCGCCCCTTTCGGCGACAATTACTCGGGCCCTCGTCCGATTCCGCCCCCGCCGCCACCGCCGCCGCCGATGAACACCCGAATTACATCCTCCTCCGGTACCAGATCCTCGATCCTGACAGCGACATCGTCGCGCAATGGAACCGCGTGTTTCTGGTGACATCCCTAATCGCCCTGTTCATCGATCCTCTGTTCTTCTACACGTCGTCGGTGGGGGGGCCGGCGTGCCTGACGACGGAGACGGGGCTGGGAGTGGCGATCACGTGCTTCCGGACGGTGACGGACCTGTTCTTCTTGCTGCACATGGTGCTGAAGTTTCGGACGGCGTATGTGGCTCCGAGCTCTAGGGTTTTTGGAAGAGGAGAACTGGTTATGGATGCCAGAGCCATTGCTACGCGCTATTTGAAGTCTGATTTTGTGATTGATCTCGCCGCTACCCTCCCCCTCCCACAGATAGTGATATGGTTGGTGATTCCAGCCACAAGACACTCAAGGGTGGATCACGCCAACAACGCAGTAGCTCTCCTAGTTCTGTTCCAATATGTTCCAAGGCTGTTCGTCATCTTCCCTCTAAACCAAAGAATCATCAAAACCACTGGTGTCATTGTCAAAACTGCCTGGGCTGGTGCTGCCTACAATCTCATCCTTTACATGCTTGCTAGCCATGTGTTGGGATCTACGTGGTATCTTCTAGCCATAGGGCGACAGTTCTCTTGTTGGAAATCAATATGTGCGAAGGAAAATGCATCAAAAGTTCTATCTTGCTTCCCCAGTTACTTGGATTGTAACAGTTTGGATCGACCCGAACGACAATACTGGCTCAACGTCACCCATGTCACTGCCAACTGCGATCCGAGGAACGAAAATGTAAAGTTCAAGTTCGGAATGTTTTCCGATGCTTTTACCAATGATGTTGCCTCCTCACACTTCATTGCAAAGTACTTCTATTGTCTTTGGTGGGGTCTCAGGAATTTGAGTTCATATGGGCAAACTTTGGATACGACGACGTATATAGGCGAGACTTTATTTTGCATATCAACCTGCATATTTGGCTTGATATTATTTTCACAACTCATTGGCAACATGCAGACATGTCTGCAATCAATGACATTAAGACTTGAAGAATGGAGGATAAAGCGAAGAGACACTGAAGAATGGATGAGACGTCGACAATTGCCTCCTGATTTGCAAGAACGAGTTCGTCGATTCGTTCAATATAAATGGCAAGCTACGAGAGGAGTTAATGAAGAATCCATATTGCGTTCATTGCCTATAGACCTTCGTCGAGAGATTCAACAACATTTGTGTTTGTCACTTGTTCGCCGTGTTCCTTTCTTCTCACAAATGGACGATCAGCTTCTGGATGCCATATGTGAACGTCTCATCTCATCTTTGTGTACCCAAGGAACCTATATAGTGCGAGAGGATGACCCAGTTAACGAAATGTTATTTATTATAAGAGGCCAACTCGAGAGCTCCACAACAAATGGCGGTCGATCTGGGTTCTTCAACTCCATCACACTAAAACCAGGTGACTTTTGTGGTGAAGAACTATTGACATGGGCCTTGATGCCAAGTTCCAGTCTAAACATGCCTTCTTCTACTCGAACCGTCCGAGCACTCACCGAAGTCGAAGCTTTCGCCCTTCGAGCAGAGGACCTCAAGTTTGTCGCCAGTCAATTCAAGCGCTTACATAGCAAGAAACTGCAACATGCCTTTAGGTATTATTCTCATCAATGGAGGACATGGGGTGCTTGCTTAATTCAAGTAGCTTGGAGGAGGCTGCAGAAGAGAAAATTGGCAAAGACATTGGCAATGAGAGAGAGCTTATGCTATTTAGATTCCATAGAAGAAGATCACGACTACGATATCGAGCTAGCCGAAGAAAATTACGACGACGACGATATGTCTTCTGCAGACTACCCGAACAAAACTCAACATCTTGGGGCCACAATTTTGGCTTCAAAGTTTGCTGCCAACACTAGAAAAGGAGTTAATCACAAAGGCCAATCATCCAAACCTTCAAGTTTGAAAATGCCAAAGTTGTTTAAACCAGATGAACCTGATTTTTCTATGTAG 2292 47.08 LSLAITPPVGRSPILLAPPIISPFSSKTSHVLLCSSSLHQPSVSHFSPGNSTKPRNPPWKMNRIIQSPASKFRPFRRQLLGPSSDSAPAATAAADEHPNYILLRYQILDPDSDIVAQWNRVFLVTSLIALFIDPLFFYTSSVGGPACLTTETGLGVAITCFRTVTDLFFLLHMVLKFRTAYVAPSSRVFGRGELVMDARAIATRYLKSDFVIDLAATLPLPQIVIWLVIPATRHSRVDHANNAVALLVLFQYVPRLFVIFPLNQRIIKTTGVIVKTAWAGAAYNLILYMLASHVLGSTWYLLAIGRQFSCWKSICAKENASKVLSCFPSYLDCNSLDRPERQYWLNVTHVTANCDPRNENVKFKFGMFSDAFTNDVASSHFIAKYFYCLWWGLRNLSSYGQTLDTTTYIGETLFCISTCIFGLILFSQLIGNMQTCLQSMTLRLEEWRIKRRDTEEWMRRRQLPPDLQERVRRFVQYKWQATRGVNEESILRSLPIDLRREIQQHLCLSLVRRVPFFSQMDDQLLDAICERLISSLCTQGTYIVREDDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLKPGDFCGEELLTWALMPSSSLNMPSSTRTVRALTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGACLIQVAWRRLQKRKLAKTLAMRESLCYLDSIEEDHDYDIELAEENYDDDDMSSADYPNKTQHLGATILASKFAANTRKGVNHKGQSSKPSSLKMPKLFKPDEPDFSM 763
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11952081 11957099 - MC08g1316 Mch8g1531 695152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1531 763 Gene3D Helix hairpin bin 444 507 - -
Mch8g1531 763 Pfam Cyclic nucleotide-binding domain 539 628 IPR000595 -
Mch8g1531 763 SUPERFAMILY Voltage-gated potassium channels 109 438 - -
Mch8g1531 763 Gene3D - 121 441 - -
Mch8g1531 763 CDD CAP_ED 516 647 IPR000595 -
Mch8g1531 763 SMART cnmp_10 516 647 IPR000595 -
Mch8g1531 763 MobiDBLite consensus disorder prediction 41 57 - -
Mch8g1531 763 SUPERFAMILY cAMP-binding domain-like 446 641 IPR018490 -
Mch8g1531 763 ProSiteProfiles cAMP/cGMP binding motif profile. 516 646 IPR000595 -
Mch8g1531 763 Gene3D Jelly Rolls 514 634 IPR014710 -
Mch8g1531 763 MobiDBLite consensus disorder prediction 41 60 - -
Mch8g1531 763 FunFam Cyclic nucleotide-gated ion channel 1 514 632 - -
Mch8g1531 763 Pfam Ion transport protein 119 443 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1531 763 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 102 742 - -
Mch8g1531 763 FunFam Cyclic nucleotide-gated ion channel 1 443 507 - -
Mch8g1531 763 MobiDBLite consensus disorder prediction 732 763 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g1858 Mch-Chr6:21088339 Mch8g1531 Mch-Chr8:11952081 3.89E-212 dispersed
Mch8g1531 Mch-Chr8:11952081 Mch8g2727 Mch-Chr8:30492069 1.65E-230 dispersed
Mch11g0634 Mch-Chr11:4089781 Mch8g1531 Mch-Chr8:11952081 7.40E-300 transposed
Mch4g2352 Mch-Chr4:24784532 Mch8g1531 Mch-Chr8:11952081 3.21E-121 transposed
Mch6g0569 Mch-Chr6:3847913 Mch8g1531 Mch-Chr8:11952081 2.12E-302 transposed
Mch9g0659 Mch-Chr9:4957895 Mch8g1531 Mch-Chr8:11952081 0 transposed
Mch6g0161 Mch-Chr6:1077001 Mch8g1531 Mch-Chr8:11952081 2.49E-17 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1531 K05391 - csv:101216651 1281.93