Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1592 ATGTTCGATTGTGGTGGATACAAATCGCAGTACATCGGCGGCCACAAAGAGAAATTTGTGAGGTTGGATGATTTGGATTCAAACTTGTCAATGCCATCAGGAACGAGCGGGATGAAGAGATGCCGATTCAAGCTAGAGGGCCTCCCACTGCCATTTACGAGCCGATCGAAGCACCGAAACGCGTCGAAAACGTTCCGGCGCGGCGTCCAGAGGAGCTCCGACGGGCTGGTCACCCTCGGCCGCTCCCTCCAGTCGAGCGTCTCCCGCGTCATCTTCCCGGAGGATCTCAAGGTCTCGGACCAGAAGATCTTCGACCCGCAGGACAAATCGCTGCTGTTCTGGAACAAGCTGTTCGTGGTGGCCTGCATCCTCTCGGTCTCCATTGATCCCCTATTCTTCTACCTCCCCACGTTCAACCACGCCTCCTACTGCCTCGGCATGGACTCTCCCCTTGCCACCGCCACCACCACCATGCGCACCATCGTCGATGTCTTTTACCTCATTCGGATGGGCTTTCAGTTTCGGACGGCTTACATTGCGCCATCGTCGAGGGTGTTTGGCCGCGGCGAGCTTGTCATCGATCCGGCCGAGATCGCCAAGCGCTATCTCCAGCGCTACTTCGTCGCGGATTTTCTCTCCGTTCTGCCTCTGCCTCAGGTGGTGGTTTGGAGGTTTCTTCACAGATCAAAAGGTTCGGAGGTGTTGGCGACGAAGCAAGCGTTGTTAAACATAGTGTTTCTTCAGTACATTCCCAGATTCATCAGATTCATTCCTCTGAACATAGAGCTTAAGAAGACGGCAGGAGTTTTTGCAGAATCCGCCTGGGCTGGAGCTGCTTACTATCTGCTCCTCTACATGCTTGCCAGTCATATTGCAGGAGCGTTCTGGTACTTGCTGGCGGTGGAGAGGAACGACGCGTGTTGGAGGCAGGCGTGCAAAGCGAGCGGGAAGTGCAACATAAACTATCTCTACTGCGGGAACAAGCATATGTCTGGATATAAGGAATGGCGAAACATCAGCGTCCAGGTTCTGACCAAGGCCTGCTCCGCCATCGGCGACTACTTGCCCTTCAACTACGGCATTTACACTCAAGCCATCGCCTCCGGCATTGTCCAGGCCAAGCCTTTCTTCCCCAAGTTCTGCTACTGCTTGTGGTGGGGCTTGCAAAACTTGAGTACGCTTGGTCAGGGCCTGCTCACCAGTACCTATCCTGGAGAGATCATCTTTTCCATCCTCATAGCAATCTCTGGCCTTCTTCTTTTTGCCCTCTTGATTGGAAACATGCAAACGTACCTTCAATCTCTGACGGTCCGGCTTGAGGAGATGCGCATCAAGAGGCGAGACTCGGAGCAGTGGATGCACCACCGGCTACTTCCGATGGACTTGAGAGAAAAAGTTAGGCGCTACGATCAGTACAAATGGCTGGAGACCAGAGGAGTGGACGAAGAGAGCTTGGTCCAAAGTCTGCCCAAAGATCTGAGGAGAGACATAAAACGCCATCTGTGTCTGAACTTGGTGCGAAGGGTGCCTCTGTTTGCGAACATGGACGAGCGGTTGCTGGACGCCATATGCGAGCGGCTGAAGCCAACGCTGTACACGGAGAACACGTACATTGTGCGAGAAGGAGACCCAGTGGACGAAATGCTGTTCATCATCCGCGGCCGCCTCGAGAGCGTCACCACCGACGGCGGCCGGAGCGGCTTCTTCAACCGCGGCGTCCTCAAGGAAGGCGACTTCTGTGGGGAGGAGCTGCTGACGTGGGCGCTCGACCCCAAGTCCGGCGCCAACCTGCCATCCTCGACGCGTACGGTGCACGCGCTGGCGGAGGTGGAGGCGTTCGCGTTGGAGGCGGAGGAGCTGAAGTTCGTGGCGACCCAGTTCCGGCGGCTGCACAGCCGGCAAGTGCAGCACACGTTCCGGTTCTACTCGCAGCAGTGGCGGACGTGGGCGTCGTGCTTCATTCAGGCGGCGTGGCGGCGGTACTCGAAGAGGAAGCTGGCGGAGCTGAGGCGGAAGGAGGAGGAGGAGGAGGCGGAGGCGGAGGCTGCGGCGTACAGCTCGTCGCGGCTGGGAGCCACCATTCTTGCTTCGAGATTTGCGGCCAATGCGCTGCGGGGCCACCGGATGCGCAACATCAGCGGGAGGACCTTGATCTCTTTGCAGAAGCCCCCCGAGCCCGATTTTTCCGTCTACAAGGGAGAGTAG 2205 57.19 MFDCGGYKSQYIGGHKEKFVRLDDLDSNLSMPSGTSGMKRCRFKLEGLPLPFTSRSKHRNASKTFRRGVQRSSDGLVTLGRSLQSSVSRVIFPEDLKVSDQKIFDPQDKSLLFWNKLFVVACILSVSIDPLFFYLPTFNHASYCLGMDSPLATATTTMRTIVDVFYLIRMGFQFRTAYIAPSSRVFGRGELVIDPAEIAKRYLQRYFVADFLSVLPLPQVVVWRFLHRSKGSEVLATKQALLNIVFLQYIPRFIRFIPLNIELKKTAGVFAESAWAGAAYYLLLYMLASHIAGAFWYLLAVERNDACWRQACKASGKCNINYLYCGNKHMSGYKEWRNISVQVLTKACSAIGDYLPFNYGIYTQAIASGIVQAKPFFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEIIFSILIAISGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRLLPMDLREKVRRYDQYKWLETRGVDEESLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPTLYTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGVLKEGDFCGEELLTWALDPKSGANLPSSTRTVHALAEVEAFALEAEELKFVATQFRRLHSRQVQHTFRFYSQQWRTWASCFIQAAWRRYSKRKLAELRRKEEEEEAEAEAAAYSSSRLGATILASRFAANALRGHRMRNISGRTLISLQKPPEPDFSVYKGE 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 12749781 12753406 + MC08g1353 Mch8g1592 695213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1592 734 SUPERFAMILY cAMP-binding domain-like 441 631 IPR018490 -
Mch8g1592 734 Gene3D - 116 436 - -
Mch8g1592 734 SUPERFAMILY Voltage-gated potassium channels 106 433 - -
Mch8g1592 734 ProSiteProfiles cAMP/cGMP binding motif profile. 511 641 IPR000595 -
Mch8g1592 734 Gene3D Helix hairpin bin 438 502 - -
Mch8g1592 734 Pfam Cyclic nucleotide-binding domain 532 621 IPR000595 -
Mch8g1592 734 CDD CAP_ED 511 642 IPR000595 -
Mch8g1592 734 SMART cnmp_10 511 642 IPR000595 -
Mch8g1592 734 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 82 710 - -
Mch8g1592 734 FunFam Cyclic nucleotide-gated ion channel 1 438 502 - -
Mch8g1592 734 Pfam Ion transport protein 113 438 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1592 734 Coils Coil 659 686 - -
Mch8g1592 734 Gene3D Jelly Rolls 509 629 IPR014710 -
Mch8g1592 734 FunFam Cyclic nucleotide-gated ion channel 1 509 627 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1787 Mch-Chr3:19059399 Mch8g1592 Mch-Chr8:12749781 3.20E-125 dispersed
Mch8g1592 Mch-Chr8:12749781 Mch8g2727 Mch-Chr8:30492069 0 dispersed
Mch8g1592 Mch-Chr8:12749781 Mch6g1858 Mch-Chr6:21088339 1.16E-256 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1592 K05391 - csv:101221166 1305.81