Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1622 ATGGCTGGTTTTAGAGTTGAGTTCTTGATGCTTTTGGTTTCGGTGGCTGTGATTCTCCCAACTCTCAGAGCTGGGATTGCTGAATATGATGAGTACTTGCTGCAAAAGGCTGAAGAAGCCAAAATGGCTTCTCTTGAGGCCTTCCATTCTGACCCCATGAATGTCACTGACCACTTCAACCTTCAAGTCCATTTAGCTTTGGAGGGGAGCAATAGCACGAGGAGGAGCATGAAGAAATACAACGGGCCGTGCATGGCCACAAACCCCATCGACCGGTGCTGGCGTTGCGACCCAAACTGGGCCAACAACCGTAAGAAACTTGCCACTTGTGTGCTTGGTTTTGGCCGAAAAACCCGAGGCGGTGTGAAGGGTAAGATCTATGTCGTCACTGATCCCTCTGACGCTGATGTCGTAAACCCTAAACCTGGAACCCTAAGATACGGGGCAGTCCAGAAGAAGCCATTGTGGATCATCTTTGGTCGGAGCATGATCATTACACTGTCCAAAGAGCTGCTTGTGGCCAGCCATAAGACCATCGATGCCCGCGGCGCCAATGTCCACATTGCCTTCGGTGCTGGTATCAGCATCCAATTCGCCAAGAATGTGATCATCCACGGCCTCCACATCCACCACATTATCGTTGCCACCGGCGGTCTGATCAGGGACTCCACCAACCATGTTGGCCTCCGAACAAACAGCGACGGTGACGGCGTCTCCATCTTCGGTTCCACCAACATCTGGCTCGACCATCTCTCCATGTCCAACTGCGCGGACGGACTCATCGACGCAATCCAAGGCTCCACTGCCATCACCATCTCAAACTCCCATTTCACCCATCACAACGACGTGATGTTGTTTGGTGCGAGCGACTCGTATCAGGGCGACTCAGTCATGCAAGTGACAGTAGCGTTCAACCATTTCGGTAAGGGATTGGTGCAGAGGATGCCCAGATGCAGATGGGGATTCTTCCACGTCGTGAACAACGATTACACCCACTGGCTCATGTACGCCATTGGTGGCAGCCAACACCCCACCATTATCAGCCAGGGCAATCGCTTCATTGCCCCACCCAACCCTGCCGCAAAACAGATTACAAACAGAAACTACGCGACCGAGGCTGTATGGAAGACATGGACATGGAGGTCAGAAGGAGATCTAATGATGAATGGAGCATACTTTGTGCAGTCTGGAAATCCAAGCAAACGAAGGCCATACAGCAGGCATGACATGATCAAGGCCAAGCCTGGAACTTTTGTTAGGAGGCTCACTCGTTTCTCTGGCTCACTCAACTGCTTTGTTGGTCGCCCTTGCTAA 1314 51.98 MAGFRVEFLMLLVSVAVILPTLRAGIAEYDEYLLQKAEEAKMASLEAFHSDPMNVTDHFNLQVHLALEGSNSTRRSMKKYNGPCMATNPIDRCWRCDPNWANNRKKLATCVLGFGRKTRGGVKGKIYVVTDPSDADVVNPKPGTLRYGAVQKKPLWIIFGRSMIITLSKELLVASHKTIDARGANVHIAFGAGISIQFAKNVIIHGLHIHHIIVATGGLIRDSTNHVGLRTNSDGDGVSIFGSTNIWLDHLSMSNCADGLIDAIQGSTAITISNSHFTHHNDVMLFGASDSYQGDSVMQVTVAFNHFGKGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPAAKQITNRNYATEAVWKTWTWRSEGDLMMNGAYFVQSGNPSKRRPYSRHDMIKAKPGTFVRRLTRFSGSLNCFVGRPC 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13220294 13222436 + MC08g1370 Mch8g1622 695243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1622 437 SUPERFAMILY Pectin lyase-like 88 427 IPR011050 -
Mch8g1622 437 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Mch8g1622 437 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
Mch8g1622 437 PRINTS Pollen allergen Amb family signature 408 431 IPR018082 -
Mch8g1622 437 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Mch8g1622 437 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Mch8g1622 437 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Mch8g1622 437 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Mch8g1622 437 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Mch8g1622 437 Pfam Pectate lyase 173 353 IPR002022 -
Mch8g1622 437 SMART amb_all 162 359 IPR002022 -
Mch8g1622 437 Gene3D - 87 430 IPR012334 -
Mch8g1622 437 Pfam Pectate lyase, N terminus 26 76 IPR007524 GO:0030570(InterPro)
Mch8g1622 437 PANTHER PECTATE LYASE 18-RELATED 19 434 IPR045032 GO:0030570(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1522 Mch-Chr3:17330495 Mch8g1622 Mch-Chr8:13220294 1.83E-223 dispersed
Mch8g1622 Mch-Chr8:13220294 Mch8g2008 Mch-Chr8:22357645 8.88E-216 dispersed
Mch8g1622 Mch-Chr8:13220294 Mch9g2162 Mch-Chr9:22307006 1.39E-224 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1622 K01728 - csv:101202789 809.675