Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1623 GAGGCGCCAGCTTTGGTACTGAAGAACGAACACAACCTCAGAATATGTTGGACTGAAGGCCAATCTCAGTCCATGAGGCGCGTCAAGAGACGGCGGAGAGACCCCACCTCTGCCTCCGCCTCCGCCTCCGCCACCGCCACCGATCAAACTAACAAGCAGCAGTCATCCGATCAAGCTCCGACCACCACTACAAAGCGAAGTTCACGGTTTCGCGGCGTCAGCAGACATAGATGGACTGGAAGGTTTGAAGCTCATTTATGGGATAAGCTTTCTTGGAACATGACACAGAAGAAGAAGGGCAAACAAGGAGCTTATGATGAAGAAGAATCAGCTGCAAGAGCATATGATTTAGCAGCACTCAAGTATTGGGGTGTAACTACCATCACTAATTTTCCTACATCAGAATATGAGAAGGAGATTGAGATAATGCAAACAATGACAAAAGAGGAGTATTTGGCCTCTTTAAGAAGAAAGAGCAGTGGCTTCTCAAGAGGTGTATCTAAATATAGGGGAGTTGCAAGGCACCATCATAATGGTAGATGGGAAGCAAGAATAGGGAGAGTTTTTGGGAACAAGTACCTCTATCTTGGAACTTATAGCACCCAAGAGGACGCTGCTCGAGCTTACGATATGGCAGCCATTGAATATCGAGGCATAAATGCAGTCACCAACTTCGACTGGAGCAATTACATGGCCTGGCTGAAGCCCCCGCCACCACAAGCCACCGCCAACGGCGCCCACACGACATCGGACCCCCGCAAAGAACTCTGCACCTCTGGCTCCTTCCCGGCAGACGAAACCTCCCTCTTCAAAACTCATCACTTTGACACAGATTCCTTCCATTCCCTTCAGAAGCAAGAGCTTCTTGAGAGCTGCAGCGCCCCTCTCAGTGGTTATGCCAAATCTTCTTCTCCGTCAGCTCTCGACCTCCTTCTTCGATCTTCATTTTTCAAGAAACTGGTTGAGACCAACTCGAATCTCTCTGCAGATGAGGTTGAGAATGGAGAAGAGGCAAAGACTCGAGTGCAGCTTGACAGCGTCTTTGATGAGTTCGGAGACGTCTTCTGCGATAGAATTGCAGACGTCCCGTTCGCTTGCAGTTCCAACAAAGATCTGCAAGAAAGTGAGCTTCATTCGTTCTTCAATGGTGCATTTCATCGCTTCAAAGCAGCC 1173 48.93 EAPALVLKNEHNLRICWTEGQSQSMRRVKRRRRDPTSASASASATATDQTNKQQSSDQAPTTTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNMTQKKKGKQGAYDEEESAARAYDLAALKYWGVTTITNFPTSEYEKEIEIMQTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEDAARAYDMAAIEYRGINAVTNFDWSNYMAWLKPPPPQATANGAHTTSDPRKELCTSGSFPADETSLFKTHHFDTDSFHSLQKQELLESCSAPLSGYAKSSSPSALDLLLRSSFFKKLVETNSNLSADEVENGEEAKTRVQLDSVFDEFGDVFCDRIADVPFACSSNKDLQESELHSFFNGAFHRFKAA 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13240220 13243909 + MC08g1371 Mch8g1623 695244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1623 391 MobiDBLite consensus disorder prediction 22 72 - -
Mch8g1623 391 Pfam AP2 domain 68 124 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1623 391 Pfam AP2 domain 167 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1623 391 SMART rav1_2 168 232 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1623 391 SMART rav1_2 69 138 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1623 391 Gene3D AP2/ERF domain 68 134 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1623 391 Gene3D AP2/ERF domain 167 227 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1623 391 ProSiteProfiles AP2/ERF domain profile. 69 132 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1623 391 CDD AP2 167 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1623 391 ProSiteProfiles AP2/ERF domain profile. 168 226 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1623 391 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1623 391 PRINTS Ethylene responsive element binding protein signature 208 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1623 391 SUPERFAMILY DNA-binding domain 68 134 IPR016177 GO:0003677(InterPro)
Mch8g1623 391 MobiDBLite consensus disorder prediction 37 68 - -
Mch8g1623 391 CDD AP2 68 134 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g1623 391 FunFam AP2-like ethylene-responsive transcription factor 167 228 - -
Mch8g1623 391 SUPERFAMILY DNA-binding domain 167 228 IPR016177 GO:0003677(InterPro)
Mch8g1623 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 39 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1623 Mch-Chr8:13240220 Mch8g2038 Mch-Chr8:22867643 5.37E-103 dispersed
Mch8g1623 Mch-Chr8:13240220 Mch8g1031 Mch-Chr8:7280075 9.33E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43877 PF00847 AP2 2.50E-09 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1623 - - - 0.0