Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1659 ATGGACTTGACTCCTGCTATTTCCATTTCCACCGCCGCCGCCATTTCCACCGGAGGAGGAGCTGTGAAATCCCCTGAACCGGACTACGACACTCCCACCAGAATCCCGCCGATTACCAAGGCGGCTCCGCCGTTCAGCAACGGCGTCCTCAAGCGTCACCACCACCACACGGCGGCGGCGCCTTCTCAATCGCCGCCGGTTGTCTACAAGGAATGCCTGAAAAACCACGCCGCCAGTTTGGGCGGCCACGCGCTGGATGGGTGCGGCGAGTTCATGCCTTCCCCCACCGCCACCGCCGCCGATCCAACCTCCATGAAATGCGCCGCCTGCGGCTGCCACCGGAACTTCCACCGCCGCGAGTCGGAGGAGCCAATCGCCACTCCCACCACCACCCACGTGATTGAGTACCAGCCCCACCACCGCCACCACCCTCCGCCGCCGCACCGGAGCCCGAGCTCCGCCTCCCCTCCGCCGATCTCCTCGTCGTACTACCCGTCCGCACCCCACATGCTTCTCGCCCTCTCCGGCGGGCTGCCGGAAACGACCGCAGGCGGCGGCGGCGGAGTCCCCCACTCGATCCTTACTCCGAGCCCCAATTCTCGAAAACGATTCAGAACAAAATTCACCCAAAATCAGAAGGACAAGATGTACGAATTCGCAGAAAAAGTGGGCTGGAAGATGCAGAAAAAAGACGACGAAATCATTCAACAATTCTGCGCTGACGTCGCCGTCGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACCCTCGGAAAAAAGGACCCCGCCGCCCGGAACATCAACGCCGGCGATGCCGACGCCGATGACGACAAAATTAACGGCAGCGCCGGCGACGAGCCCCACGCCGCCGCAAATGGGTCCTCTTCTTCCTCT 903 61.79 MDLTPAISISTAAAISTGGGAVKSPEPDYDTPTRIPPITKAAPPFSNGVLKRHHHHTAAAPSQSPPVVYKECLKNHAASLGGHALDGCGEFMPSPTATAADPTSMKCAACGCHRNFHRRESEEPIATPTTTHVIEYQPHHRHHPPPPHRSPSSASPPPISSSYYPSAPHMLLALSGGLPETTAGGGGGVPHSILTPSPNSRKRFRTKFTQNQKDKMYEFAEKVGWKMQKKDDEIIQQFCADVAVDRGVLKVWMHNNKNTLGKKDPAARNINAGDADADDDKINGSAGDEPHAAANGSSSSS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14154607 14155509 - MC08g1394 Mch8g1659 695280

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1659 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Mch8g1659 301 MobiDBLite consensus disorder prediction 17 64 - -
Mch8g1659 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 259 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Mch8g1659 301 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
Mch8g1659 301 FunFam Zinc-finger homeodomain protein 2 191 262 - -
Mch8g1659 301 MobiDBLite consensus disorder prediction 137 162 - -
Mch8g1659 301 NCBIfam homeobox domain, ZF-HD class 201 258 IPR006455 -
Mch8g1659 301 SUPERFAMILY Homeodomain-like 195 262 IPR009057 -
Mch8g1659 301 Gene3D - 194 262 - -
Mch8g1659 301 MobiDBLite consensus disorder prediction 175 201 - -
Mch8g1659 301 MobiDBLite consensus disorder prediction 258 301 - -
Mch8g1659 301 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1659 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2304 Mch-Chr4:24480333 Mch8g1659 Mch-Chr8:14154607 1.56E-79 dispersed
Mch8g1659 Mch-Chr8:14154607 Mch9g2134 Mch-Chr9:22139627 1.03E-50 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch1g1388 . 46 228 ZF-HD Transcription Factor Family AT5G65410 54.7 1.4e-47 186.8
Mch8g0250 . 44 248 ZF-HD Transcription Factor Family AT5G65410 54.6 8.2e-43 171.0
Mch1g1388 . 1 224 ZF-HD Transcription Factor Family AT4G24660 50.4 4.5e-55 211.5
Mch10g0649 . 1 141 ZF-HD Transcription Factor Family AT4G24660 55.7 6.2e-44 174.5
Mch8g0250 . 47 247 ZF-HD Transcription Factor Family AT2G02540 51.5 5.7e-37 151.8
Mch1g1506 . 107 328 ZF-HD Transcription Factor Family AT2G18350 50.4 1.6e-51 199.9
Mch4g2304 . 6 257 ZF-HD Transcription Factor Family AT5G15210 55.7 3.2e-52 202.2
Mch8g1659 . 24 301 ZF-HD Transcription Factor Family AT5G15210 51.1 3.8e-45 178.7
Mch4g2304 . 16 259 ZF-HD Transcription Factor Family AT3G28920 58.2 1.0e-57 220.7
Mch8g1659 . 23 288 ZF-HD Transcription Factor Family AT3G28920 57.9 8.3e-52 201.1
Mch4g2304 . 1 263 ZF-HD Transcription Factor Family AT5G39760 51.6 9.8e-51 197.6
Mch8g1659 . 31 274 ZF-HD Transcription Factor Family AT5G39760 61.9 3.6e-45 179.1
Mch4g2304 . 64 260 ZF-HD Transcription Factor Family AT1G69600 51.5 4.3e-48 188.3
Mch9g2134 . 21 207 ZF-HD Transcription Factor Family AT1G69600 52.3 3.1e-46 182.2
Mch8g0250 . 47 247 ZF-HD Transcription Factor Family AT2G02540 51.5 5.7e-37 151.8
Mch1g1388 . 1 224 ZF-HD Transcription Factor Family AT4G24660 50.4 4.5e-55 211.5
Mch10g0649 . 1 141 ZF-HD Transcription Factor Family AT4G24660 55.7 6.2e-44 174.5
Mch4g2304 . 1 263 ZF-HD Transcription Factor Family AT5G39760 51.6 9.8e-51 197.6
Mch8g1659 . 31 274 ZF-HD Transcription Factor Family AT5G39760 61.9 3.6e-45 179.1
Mch1g1506 . 107 328 ZF-HD Transcription Factor Family AT2G18350 50.4 1.6e-51 199.9
Mch1g1388 . 46 228 ZF-HD Transcription Factor Family AT5G65410 54.7 1.4e-47 186.8
Mch8g0250 . 44 248 ZF-HD Transcription Factor Family AT5G65410 54.6 8.2e-43 171.0
Mch4g2304 . 64 260 ZF-HD Transcription Factor Family AT1G69600 51.5 4.3e-48 188.3
Mch9g2134 . 21 207 ZF-HD Transcription Factor Family AT1G69600 52.3 3.1e-46 182.2
Mch4g2304 . 6 257 ZF-HD Transcription Factor Family AT5G15210 55.7 3.2e-52 202.2
Mch8g1659 . 24 301 ZF-HD Transcription Factor Family AT5G15210 51.1 3.8e-45 178.7
Mch4g2304 . 16 259 ZF-HD Transcription Factor Family AT3G28920 58.2 1.0e-57 220.7
Mch8g1659 . 23 288 ZF-HD Transcription Factor Family AT3G28920 57.9 8.3e-52 201.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43879 PF04770 ZF-HD_dimer 6.00E-29 No_clan Mch TF