Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1659 ATGGACTTGACTCCTGCTATTTCCATTTCCACCGCCGCCGCCATTTCCACCGGAGGAGGAGCTGTGAAATCCCCTGAACCGGACTACGACACTCCCACCAGAATCCCGCCGATTACCAAGGCGGCTCCGCCGTTCAGCAACGGCGTCCTCAAGCGTCACCACCACCACACGGCGGCGGCGCCTTCTCAATCGCCGCCGGTTGTCTACAAGGAATGCCTGAAAAACCACGCCGCCAGTTTGGGCGGCCACGCGCTGGATGGGTGCGGCGAGTTCATGCCTTCCCCCACCGCCACCGCCGCCGATCCAACCTCCATGAAATGCGCCGCCTGCGGCTGCCACCGGAACTTCCACCGCCGCGAGTCGGAGGAGCCAATCGCCACTCCCACCACCACCCACGTGATTGAGTACCAGCCCCACCACCGCCACCACCCTCCGCCGCCGCACCGGAGCCCGAGCTCCGCCTCCCCTCCGCCGATCTCCTCGTCGTACTACCCGTCCGCACCCCACATGCTTCTCGCCCTCTCCGGCGGGCTGCCGGAAACGACCGCAGGCGGCGGCGGCGGAGTCCCCCACTCGATCCTTACTCCGAGCCCCAATTCTCGAAAACGATTCAGAACAAAATTCACCCAAAATCAGAAGGACAAGATGTACGAATTCGCAGAAAAAGTGGGCTGGAAGATGCAGAAAAAAGACGACGAAATCATTCAACAATTCTGCGCTGACGTCGCCGTCGACAGAGGCGTTCTCAAAGTTTGGATGCACAACAACAAGAACACCCTCGGAAAAAAGGACCCCGCCGCCCGGAACATCAACGCCGGCGATGCCGACGCCGATGACGACAAAATTAACGGCAGCGCCGGCGACGAGCCCCACGCCGCCGCAAATGGGTCCTCTTCTTCCTCT 903 61.79 MDLTPAISISTAAAISTGGGAVKSPEPDYDTPTRIPPITKAAPPFSNGVLKRHHHHTAAAPSQSPPVVYKECLKNHAASLGGHALDGCGEFMPSPTATAADPTSMKCAACGCHRNFHRRESEEPIATPTTTHVIEYQPHHRHHPPPPHRSPSSASPPPISSSYYPSAPHMLLALSGGLPETTAGGGGGVPHSILTPSPNSRKRFRTKFTQNQKDKMYEFAEKVGWKMQKKDDEIIQQFCADVAVDRGVLKVWMHNNKNTLGKKDPAARNINAGDADADDDKINGSAGDEPHAAANGSSSSS 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14154607 14155509 - MC08g1394 Mch8g1659 695280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1659 301 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 69 120 IPR006456 -
Mch8g1659 301 MobiDBLite consensus disorder prediction 17 64 - -
Mch8g1659 301 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 54 259 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Mch8g1659 301 Pfam ZF-HD protein dimerisation region 67 121 IPR006456 -
Mch8g1659 301 FunFam Zinc-finger homeodomain protein 2 191 262 - -
Mch8g1659 301 MobiDBLite consensus disorder prediction 137 162 - -
Mch8g1659 301 NCBIfam homeobox domain, ZF-HD class 201 258 IPR006455 -
Mch8g1659 301 SUPERFAMILY Homeodomain-like 195 262 IPR009057 -
Mch8g1659 301 Gene3D - 194 262 - -
Mch8g1659 301 MobiDBLite consensus disorder prediction 175 201 - -
Mch8g1659 301 MobiDBLite consensus disorder prediction 258 301 - -
Mch8g1659 301 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 69 120 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g2304 Mch-Chr4:24480333 Mch8g1659 Mch-Chr8:14154607 1.56E-79 dispersed
Mch8g1659 Mch-Chr8:14154607 Mch9g2134 Mch-Chr9:22139627 1.03E-50 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43879 PF04770 ZF-HD_dimer 6.00E-29 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1659 - - - 0.0