Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1665 ATGGGCGTAGACGCAGAGAATCCCAAATTACTGGACTGGACTTGTAATTCTGATGACGAAGAAGAAACCGAATCCCTCTTCTTCTTCCGCCAAATTTGCCCGCCCGACTTCTCCAGAAAGCTGCTGGCGGAGGTGATAGCCACGTATTTGATGGTGTTTGTCACGTGCGGGGCGGCGGCATTGAGCGCCATCGACGAACGACAGGTCTCCAAGCTCGGAGCGTCCCTCACCGGCGGGATGATCGTCACCGTCATGATCTACGCCGTCGGCCACATCTCCGGCGCCCACATGAACCCCGCCGTCACCTTCGCCTTCGCCGCCGTTCGACGTTTTCCATGGAAACAGGTTCCTCTATATGCAGCTGCTCAACTAAGTGGGGCAACATCAGCTGCCTTTTCACTACGCATATTATTGCATCCAATAAAAGAAATAGGCATTACTTCACCTTCAGGACCAGAGTTTCAAGCTCTGCTAATGGAGATTGTAGTCTCATTCACTATGATGTTTGTCACCTCTGCGGTCGCCACCGACACGAAAGCTATTGGAGAGTTGGCCGGTATAGCAGTTGGCTCAGCTGTATGTATCACATCCATCTTTGCAGGGCCTATATCGGGTGGGTCGATGAACCCTGCGAGGTCAATAGGGCCTGCAATTGCAAGTTCACATTACGAAGGGATTTGGGTGTACTTGGTCGGACCAGTTGTAGGGACGCTATTAGGGGCATGGTCATATAATTTCATACGAGCGAGGGAAAAGCACGAGCATCTACTTTCTCCGCATTGA 783 51.85 MGVDAENPKLLDWTCNSDDEEETESLFFFRQICPPDFSRKLLAEVIATYLMVFVTCGAAALSAIDERQVSKLGASLTGGMIVTVMIYAVGHISGAHMNPAVTFAFAAVRRFPWKQVPLYAAAQLSGATSAAFSLRILLHPIKEIGITSPSGPEFQALLMEIVVSFTMMFVTSAVATDTKAIGELAGIAVGSAVCITSIFAGPISGGSMNPARSIGPAIASSHYEGIWVYLVGPVVGTLLGAWSYNFIRAREKHEHLLSPH 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 14557529 14561347 - MC08g1397 Mch8g1665 695286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1665 260 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1665 260 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1665 260 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1665 260 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1665 260 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1665 260 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1665 260 PANTHER AQUAPORIN NIP2-1 32 251 IPR034294 -
Mch8g1665 260 CDD MIP 39 247 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1665 260 SUPERFAMILY Aquaporin-like 32 255 IPR023271 -
Mch8g1665 260 Gene3D Glycerol uptake facilitator protein. 4 256 IPR023271 -
Mch8g1665 260 Pfam Major intrinsic protein 35 244 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g1665 260 ProSitePatterns MIP family signature. 96 104 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0629 Mch-Chr5:4200987 Mch8g1665 Mch-Chr8:14557529 4.49E-41 dispersed
Mch8g1665 Mch-Chr8:14557529 Mch8g1676 Mch-Chr8:14723573 7.26E-130 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1665 K09874 - csv:101205692 362.844