Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1792 ATGGAGGACGGCCGTGCTGTGAGCAAGGCCATGCTTGATTCAGAACCATCGGGTTCGTACAGAGACATCATTACTGTTGCTACTATCGCTACGGGTATTCAGTTTGGGTGGGCCCTCCAGCTGTCGTTGCTGACGCCGTACGTCCAGCAACTCGGCGTCCCTCACCCATGGTCCTCTTTCGTCTGGCTTTGTGGGCCCATCTCAGGCCTACTGGTCCAGCCCACCGTTGGGTACTTCAGCGACCGTTGCACCTCAAGGTTCGGTCGGCGCCGCCCCTTCATCATGTCAGGGTCGGGGTTTGTAGCGGTTGCAGTTTTTCTCATTGGGTTCGCTGCGGATCTTGGGCACGCAGCGGGTGATAAGCATTCGGATCCTGTAAAATCCAGGGCGGTGGCCATATATGTGGTCGGGTTCTGGGTGTTGGACGTGGCAAACAACATGCTGCAGGGTCCTTGCAGAGCCTTCTTGGCAGATATATCCTGTAAAAGCCAGAAGAAGATGAGAGTGGCGAACGCCTTATTCTCCTTCTTCATTGGCGTAGGGAACGTTTTAGGGTACGCAGCCGGATCTTACAGCAAACTCCACAAGATCCTCCCTTTCACACTCACTAAATCCTGCGATTCTTACTGCGCAAACCTGAAATCATGTTTCTTAGTACACATTGTCCTCCTGTTGGCAGTGACCTCGGTCACAGTGTTCTCGGTGGGGGAGAAGCAGTTGGAGCCCAGAGACGACATTGGCGAAGAGTCGACACCATTTTTCGGGAAGTTGTTCTCAGCACTGAAGCAGTTGAAGAAACCGATGTGGGTGTTGCTACTGGTGACGGCCGTGAATTGGGTGGGTTGGTTCCCGTTTTTGCTGTACGACACGGACTGGATGGGCGTGGAAGTGTACGGTGGAAAGGCGAATGGGAGTCCAGAAGAAGTGAGGTACTATGACCTTGGTGTTCGGGAAGGGGCGCTTGGGTTGATGGTGAACTCCTTCGTTCTGGGTTTTGCCGCTTTGGCGATAGAGCCCGTCAGCCGCATTCTTGGAGGTCTCAAGTGGTTATGGGGAGCTGTCAACATTATATTGGCACTTGCGATGGGATCCACCGTGGTTGTCACAAAGGTGGCTCAACGTTGGAGGGCAACTCATGGGTTGACAACTCCTCCCACCAATGTCAAAGCTGGAGCCTTTTCCATCTTTGCAGTCTTGGGTATTCCACTCTCGGTGAATTATAGTGTTCCTTATGCCCTAGCGTCAATCTTTTCTTCATCCTCCAGTGCGGGTCAAGGGCTATCTTTGGGAATTCTCAACCTGTTCATAGTGCTTCCGCAAATGTTTGTTTCAGCGGTTAGTGGGCCACTTGATTCAGTTTTTGGAGGAGGAAATTTACCGGCGTTCGTAATGGGTGCACTAGCAGCTTTTGCAAGCTCGATGTGCGCCATGTTCGTACTCCCCGATCCTCCATCTCAATCTGAGGTCTCGCTAACAATGGGCGGTGGCCACTGA 1494 52.74 MEDGRAVSKAMLDSEPSGSYRDIITVATIATGIQFGWALQLSLLTPYVQQLGVPHPWSSFVWLCGPISGLLVQPTVGYFSDRCTSRFGRRRPFIMSGSGFVAVAVFLIGFAADLGHAAGDKHSDPVKSRAVAIYVVGFWVLDVANNMLQGPCRAFLADISCKSQKKMRVANALFSFFIGVGNVLGYAAGSYSKLHKILPFTLTKSCDSYCANLKSCFLVHIVLLLAVTSVTVFSVGEKQLEPRDDIGEESTPFFGKLFSALKQLKKPMWVLLLVTAVNWVGWFPFLLYDTDWMGVEVYGGKANGSPEEVRYYDLGVREGALGLMVNSFVLGFAALAIEPVSRILGGLKWLWGAVNIILALAMGSTVVVTKVAQRWRATHGLTTPPTNVKAGAFSIFAVLGIPLSVNYSVPYALASIFSSSSSAGQGLSLGILNLFIVLPQMFVSAVSGPLDSVFGGGNLPAFVMGALAAFASSMCAMFVLPDPPSQSEVSLTMGGGH 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 17948316 17950316 - MC08g1448 Mch8g1792 695413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1792 497 CDD MFS_SLC45_SUC 23 478 - -
Mch8g1792 497 PANTHER SUGAR TRANSPORTER 15 479 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Mch8g1792 497 Gene3D MFS general substrate transporter like domains 19 239 IPR036259 -
Mch8g1792 497 NCBIfam sucrose/proton symporter 20 484 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Mch8g1792 497 SUPERFAMILY MFS general substrate transporter 21 485 IPR036259 -
Mch8g1792 497 Pfam MFS/sugar transport protein 37 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1792 K15378 - - csv:116401998 781.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0303 Mch-Chr8:2116464 Mch8g1792 Mch-Chr8:17948316 6.22E-161 dispersed
Mch8g1792 Mch-Chr8:17948316 Mch8g1852 Mch-Chr8:19356282 2.18E-135 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g1792 . 21 498 Sucrose Transporter Gene Family AT1G22710 61.8 5.1e-176 614.4
Mch8g0303 . 32 496 Sucrose Transporter Gene Family AT1G22710 50.5 4.3e-138 488.4
Mch8g1792 . 5 481 Sucrose Transporter Gene Family AT2G14670 62.8 1.0e-176 616.7
Mch8g0303 . 31 496 Sucrose Transporter Gene Family AT2G14670 50.5 2.7e-134 475.7
Mch8g1792 . 12 409 Sucrose Transporter Gene Family AT1G66570 62.4 2.6e-147 518.8
Mch8g1852 . 157 601 Sucrose Transporter Gene Family AT2G02860 71.6 1.4e-185 646.0
Mch3g0058 . 157 601 Sucrose Transporter Gene Family AT2G02860 71.1 1.0e-183 639.8
Mch8g1792 . 3 481 Sucrose Transporter Gene Family AT5G06170 61.0 4.2e-167 584.7
Mch8g1792 . 21 481 Sucrose Transporter Gene Family AT5G43610 64.3 1.6e-174 609.4
Mch8g0303 . 1 503 Sucrose Transporter Gene Family AT1G09960 69.3 7.6e-204 706.8
Mch8g1792 . 13 498 Sucrose Transporter Gene Family AT1G71880 60.6 2.4e-173 605.5
Mch8g0303 . 31 507 Sucrose Transporter Gene Family AT1G71880 50.4 1.2e-132 470.3
Mch8g1792 . 21 498 Sucrose Transporter Gene Family AT1G71890 59.8 1.5e-167 586.3
Mch8g1792 . 13 498 Sucrose Transporter Gene Family AT1G71880 60.6 2.4e-173 605.5
Mch8g0303 . 31 507 Sucrose Transporter Gene Family AT1G71880 50.4 1.2e-132 470.3
Mch8g1792 . 21 498 Sucrose Transporter Gene Family AT1G22710 61.8 5.1e-176 614.4
Mch8g0303 . 32 496 Sucrose Transporter Gene Family AT1G22710 50.5 4.3e-138 488.4
Mch8g1852 . 157 601 Sucrose Transporter Gene Family AT2G02860 71.6 1.4e-185 646.0
Mch3g0058 . 157 601 Sucrose Transporter Gene Family AT2G02860 71.1 1.0e-183 639.8
Mch8g0303 . 1 503 Sucrose Transporter Gene Family AT1G09960 69.3 7.6e-204 706.8
Mch8g1792 . 21 498 Sucrose Transporter Gene Family AT1G71890 59.8 1.5e-167 586.3
Mch8g1792 . 21 481 Sucrose Transporter Gene Family AT5G43610 64.3 1.6e-174 609.4
Mch8g1792 . 12 409 Sucrose Transporter Gene Family AT1G66570 62.4 2.6e-147 518.8
Mch8g1792 . 5 481 Sucrose Transporter Gene Family AT2G14670 62.8 1.0e-176 616.7
Mch8g0303 . 31 496 Sucrose Transporter Gene Family AT2G14670 50.5 2.7e-134 475.7
Mch8g1792 . 3 481 Sucrose Transporter Gene Family AT5G06170 61.0 4.2e-167 584.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60