Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1852 ATGTCGGCGACCCCCAACTCGGTTTCCTTTAGGGTTCCGTACAAGAACCTCCAGGATGCAGAAGTGGAAATGGTGGCTGTGGATGAACACCAGCTCCAACGGATCGACCTAAATTCTCCTCCTTCTGATAGGTATCACAGTGGAAGCCCAGAGAGTTCGTCGTCAACGCCTCCTGTTAGATCTACGCCCAATAGTTTGTTTATCTTAATTCTCAGTTGTACTATCGCTGCCGGTGTTCAATTTGGTTGGGCTTTACAGCTTTCCCTACTAACTCCCTATATTCAGACACTTGGAATTGAGCATGCATTTTCTTCGTTTATTTGGCTTTGCGGTCCCATCACTGGTCTCGTGGTTCAACCATGTGTCGGTATATGGAGTGACAAGTGTTCTTCAAAATATGGAAGGAGGCGTCCCTTTATTCTTGCTGGTTCTTTAATGATAGCAGTTGCTGTGGTGCTGATTGGATATTCTGCTGACATTGGATATTTTCTAGGAGATACGAAGGAACATTGCAGAGTATTTAAAGGTACGCGAACAAGAGCGGCTATTGTCTTTGTCATAGGCTTCTGGATGCTTGATCTTGCAAACAATACGGTGCAGGGTCCTGCTCGTGCTCTTCTAGCTGATTTATCAGGTCCTGATCAACACAATGTTGCAAATGCAGTATTTTGTTCATGGATGGCTGTTGGTAATATCCTAGGTTTTTCAGCAGGAGCTAGTGGAAACTGGCACAAATGGTTTCCTTTCCTTTTGAGTAATGCTTGTTGTGAAGCCTGTGGGAACCTTAAAGCAGCATTTCTTATTGCTGTACTTTTTCTAACCATATGTACTCTTGTTACCATATATTTTGCCGATGAAGTTCCACTTACTGCTGTAGATCAGCCACCACGTTTATCAGATTCTTCTCCTCTGTTGAATGGGCATGAGCAAAATAGTCCCGACATTTTAAAACCAGAACCTGGAAGCAATGTTGACTATGGTTATCAAGAAAATATGAATTTAAAAAATTCAAAATCAAAAATTGAGGAAAATCACAGTGAAGGTTATTATGATGGTCCTGCAACAGTGGTAGTCAAATTGTTGACCAGTTTAAGACATTTACCACCGGCCATGCATTCGGTGCTTCTAGTGATGGCTCTTAGCTGGTTATCCTGGTTTCCCTTCTTCTTATTCGATACGGATTGGATGGGAAGGGAAGTGTATCATGGGGACCCAAAAGGAAATGTGGCTGAAGAACAGGTTTATGATCAGGGTGTCAGAGAAGGTGCATTTGGTTTACTATTGAATTCTGTTGTTCTTGGTATCAGTTCTTTTTTTATAGAGCCAATGTGTCAGCGCATGGGAGCAAGACTTGTTTGGGCAATGAGCAACTTTATTGTGTTTGCATGCATGATGGGAACTACTATTATCAGTTTAATATCCGTCAGCCAATACTCCAAAGGAATTGAACATATTATTGGGGGAAATTCGACAATAAAAAATGCTGCGTTGGTCGTGTTTGCTCTTCTTGGTTTTCCTCTTGCTATAACATATAGTGTTCCATTCTCTTTGACAGCAGAATTGACTGCTGATTCTGGTGGCGGGCAAGGATTGGCTATAGGAGTTCTCAATCTTGCAGTTGTTATTCCCCAGATGATTGTGTCTCTGGGTGCGGGGCCATGGGATGCTTTATTCAATGGAGGAAACATTCCTGCGTTTGCTTTGGCTTCTATATGTGCGTTTGCTGCTGGAGTTGTTGCAGTTCTTAGATTGCCTAAACACACCACCAGTTCTTTCAAGTCCACAGGTTTTCATTTTGGTTGA 1803 42.48 MSATPNSVSFRVPYKNLQDAEVEMVAVDEHQLQRIDLNSPPSDRYHSGSPESSSSTPPVRSTPNSLFILILSCTIAAGVQFGWALQLSLLTPYIQTLGIEHAFSSFIWLCGPITGLVVQPCVGIWSDKCSSKYGRRRPFILAGSLMIAVAVVLIGYSADIGYFLGDTKEHCRVFKGTRTRAAIVFVIGFWMLDLANNTVQGPARALLADLSGPDQHNVANAVFCSWMAVGNILGFSAGASGNWHKWFPFLLSNACCEACGNLKAAFLIAVLFLTICTLVTIYFADEVPLTAVDQPPRLSDSSPLLNGHEQNSPDILKPEPGSNVDYGYQENMNLKNSKSKIEENHSEGYYDGPATVVVKLLTSLRHLPPAMHSVLLVMALSWLSWFPFFLFDTDWMGREVYHGDPKGNVAEEQVYDQGVREGAFGLLLNSVVLGISSFFIEPMCQRMGARLVWAMSNFIVFACMMGTTIISLISVSQYSKGIEHIIGGNSTIKNAALVVFALLGFPLAITYSVPFSLTAELTADSGGGQGLAIGVLNLAVVIPQMIVSLGAGPWDALFNGGNIPAFALASICAFAAGVVAVLRLPKHTTSSFKSTGFHFG 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 19356282 19362035 - MC08g1478 Mch8g1852 695473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1852 600 Pfam Major Facilitator Superfamily 76 539 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
Mch8g1852 600 MobiDBLite consensus disorder prediction 36 60 - -
Mch8g1852 600 PANTHER SUGAR TRANSPORTER 65 582 - GO:0008506(PANTHER)|GO:0016020(PANTHER)
Mch8g1852 600 Gene3D MFS general substrate transporter like domains 62 584 IPR036259 -
Mch8g1852 600 SUPERFAMILY MFS general substrate transporter 51 586 IPR036259 -
Mch8g1852 600 CDD MFS_SLC45_SUC 69 582 - -
Mch8g1852 600 FunFam Sucrose transporter SUC2 67 291 - -
Mch8g1852 600 FunFam Sucrose transport protein SUT5 372 592 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1852 K15378 - - csv:101205348 1074.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0058 Mch-Chr3:631078 Mch8g1852 Mch-Chr8:19356282 0 dispersed
Mch8g1792 Mch-Chr8:17948316 Mch8g1852 Mch-Chr8:19356282 2.18E-135 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g1792 . 21 498 Sucrose Transporter Gene Family AT1G22710 61.8 5.1e-176 614.4
Mch8g0303 . 32 496 Sucrose Transporter Gene Family AT1G22710 50.5 4.3e-138 488.4
Mch8g1792 . 5 481 Sucrose Transporter Gene Family AT2G14670 62.8 1.0e-176 616.7
Mch8g0303 . 31 496 Sucrose Transporter Gene Family AT2G14670 50.5 2.7e-134 475.7
Mch8g1792 . 12 409 Sucrose Transporter Gene Family AT1G66570 62.4 2.6e-147 518.8
Mch8g1852 . 157 601 Sucrose Transporter Gene Family AT2G02860 71.6 1.4e-185 646.0
Mch3g0058 . 157 601 Sucrose Transporter Gene Family AT2G02860 71.1 1.0e-183 639.8
Mch8g1792 . 3 481 Sucrose Transporter Gene Family AT5G06170 61.0 4.2e-167 584.7
Mch8g1792 . 21 481 Sucrose Transporter Gene Family AT5G43610 64.3 1.6e-174 609.4
Mch8g0303 . 1 503 Sucrose Transporter Gene Family AT1G09960 69.3 7.6e-204 706.8
Mch8g1792 . 13 498 Sucrose Transporter Gene Family AT1G71880 60.6 2.4e-173 605.5
Mch8g0303 . 31 507 Sucrose Transporter Gene Family AT1G71880 50.4 1.2e-132 470.3
Mch8g1792 . 21 498 Sucrose Transporter Gene Family AT1G71890 59.8 1.5e-167 586.3
Mch8g1792 . 13 498 Sucrose Transporter Gene Family AT1G71880 60.6 2.4e-173 605.5
Mch8g0303 . 31 507 Sucrose Transporter Gene Family AT1G71880 50.4 1.2e-132 470.3
Mch8g1792 . 21 498 Sucrose Transporter Gene Family AT1G22710 61.8 5.1e-176 614.4
Mch8g0303 . 32 496 Sucrose Transporter Gene Family AT1G22710 50.5 4.3e-138 488.4
Mch8g1852 . 157 601 Sucrose Transporter Gene Family AT2G02860 71.6 1.4e-185 646.0
Mch3g0058 . 157 601 Sucrose Transporter Gene Family AT2G02860 71.1 1.0e-183 639.8
Mch8g0303 . 1 503 Sucrose Transporter Gene Family AT1G09960 69.3 7.6e-204 706.8
Mch8g1792 . 21 498 Sucrose Transporter Gene Family AT1G71890 59.8 1.5e-167 586.3
Mch8g1792 . 21 481 Sucrose Transporter Gene Family AT5G43610 64.3 1.6e-174 609.4
Mch8g1792 . 12 409 Sucrose Transporter Gene Family AT1G66570 62.4 2.6e-147 518.8
Mch8g1792 . 5 481 Sucrose Transporter Gene Family AT2G14670 62.8 1.0e-176 616.7
Mch8g0303 . 31 496 Sucrose Transporter Gene Family AT2G14670 50.5 2.7e-134 475.7
Mch8g1792 . 3 481 Sucrose Transporter Gene Family AT5G06170 61.0 4.2e-167 584.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005106 1 2 1 1 1 1 2 1 1 1 0 1 2 1 1 2 1 2 1 1 1 1 2 1 1 1 2 4 3 1 41