Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1968 ATGTCGGGATCTGAGACTGGTGTGATGACGAGTAGAGAACCCTTCAGCGTCGGCGTTCAGAATAGCTCCTTACAGTCGCAGCCGGCGGCCCAAAGCATGCGATTAACCTTCAGCACCGATGGCACAGCCGTGTACAATCCCGTTATTACTCCTTCAACCTCACCGTCCTACCAATCCTCCCTCGCCGGAGTTTCTGGTAATGCCGGAATTGAGGGATCGGCCGGTGGGGGGTCTATGTTGCCTCATGGTTTCAACATAAATGCGGTGGGAAGCGAGCAAATAAAGAGGAAGAGAGGCAGGCCGAGGAAGTATGGACCCGATGGCTCCATGGCATTAGCTTTGAGTTCTGGGCCGCCTTCAGGAAGTGGAGGTTTTTCTCCTTCAACCATGGGCGCTCATGCTTCTGAAGGAGGATTGGCCTCCCCAAATTCATTGAAGAAAATTAAAGGCAGGCCACTTGGTTCAAGGAAAAAACAACAATTGGAAGCTTTGGGATCAGCTGGTATTGGATTCACTCCGCATGTTATCGATGTGAAAGCTGGAGAGGATGTATCGTCAAAAATAATGTCCTTTTCTCAGAATGGCCCTAGGGCTGTTTGTATCCTCTCTGCAAATGGAGCAATATCAAATGTGACTTTACGTCAACCTGCTACATCTGGTGGAGCCGTTACTTATGAGGGGCGATTCGAAATTTTGTCACTTTCAGGTTCGTTTCTGCTGTCTGAAAATTGTGGTCAGAGGAGCAGAACTGGTGGTTTGAGCGTGTCTTTGTCTGGCCCAGATGGCCGAGTTTTAGGTGGTGGTGTGGCGGGTCTTCTCACGGCTGCATCTCCTGTTCAGGTGGTCGTGGGAAGTTTCATTGTCGATAGCAGCAAGGATTTAAAGTCAGCGCGCCAAACCGAACCCATCTCTGCCTTGCCAATGCTAAACCCAGTCGGCATTGGTCACTTGACAGGAGGAGGAGTGAGTAGTCCATCACACGGGACGCTGAGTGAATCTTCCGGTGGCCCCAGCAGCCCCCTCAACAACAGCCCCGGAACCTGCAACAACAGCAACCATCCAGGCATGTCTGGCATGCCATGGAAGTAA 1089 51.33 MSGSETGVMTSREPFSVGVQNSSLQSQPAAQSMRLTFSTDGTAVYNPVITPSTSPSYQSSLAGVSGNAGIEGSAGGGSMLPHGFNINAVGSEQIKRKRGRPRKYGPDGSMALALSSGPPSGSGGFSPSTMGAHASEGGLASPNSLKKIKGRPLGSRKKQQLEALGSAGIGFTPHVIDVKAGEDVSSKIMSFSQNGPRAVCILSANGAISNVTLRQPATSGGAVTYEGRFEILSLSGSFLLSENCGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFIVDSSKDLKSARQTEPISALPMLNPVGIGHLTGGGVSSPSHGTLSESSGGPSSPLNNSPGTCNNSNHPGMSGMPWK 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 21661907 21665634 - MC08g1530 Mch8g1968 695589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1968 362 FunFam AT-hook motif nuclear-localized protein 1-like 173 303 - -
Mch8g1968 362 ProSiteProfiles PPC domain profile profile. 167 312 IPR005175 -
Mch8g1968 362 MobiDBLite consensus disorder prediction 90 151 - -
Mch8g1968 362 MobiDBLite consensus disorder prediction 322 356 - -
Mch8g1968 362 CDD DUF296 172 286 IPR005175 -
Mch8g1968 362 MobiDBLite consensus disorder prediction 316 362 - -
Mch8g1968 362 MobiDBLite consensus disorder prediction 115 129 - -
Mch8g1968 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 171 287 - -
Mch8g1968 362 Gene3D - 173 310 - -
Mch8g1968 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 173 286 IPR005175 -
Mch8g1968 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 336 IPR039605 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0030 Mch-Chr11:223655 Mch8g1968 Mch-Chr8:21661907 1.13E-141 dispersed
Mch7g0683 Mch-Chr7:11542434 Mch8g1968 Mch-Chr8:21661907 3.49E-74 dispersed
Mch8g1968 Mch-Chr8:21661907 Mch8g2977 Mch-Chr8:32444426 5.78E-49 dispersed
Mch8g1968 Mch-Chr8:21661907 Mch6g2172 Mch-Chr6:24087948 2.15E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1968 - - - 0.0