Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g1989 | AACATGTCTTCCTCTAGACCTTGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGACATAGCAACAGAGTTATTGCTCAAACATCTGTCGATGCAAAGCTCCAAGCAGATTTTGAGGAATCTGGGGGTTCATTTGACTACTCAAGTTCAGTGCGTGTCACAAGTGATGTTAGTGGAGATCCCCAACCTAGGTCGGACAAAGTTACAACAGCTTACCTTCATCACATACAGAAAGGCAAGCTTATCCAACCATTTGGTTGCTTATTGGCCTTAGATGACAAAACATTCAAGGTTATTGCATATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATTGGAACAGATGTAAGGACTATTTTCACTGCACCTAGTGCATCTGCCCTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACACTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCTGGAAAACCTTTCTATGCCATTGTGCATCGTGTCACTAACAGCTTAATCATCGACTTTGAGCCCGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTGCAATCCTATAAACTTGCTGCAAAAGCAATTACTCGATTGCAGTCCTTGCCCAGTGGGAGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAGGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAATTCCATGATGATGATCATGGAGAAGTGATCTCTGAAGTTACAAAGCCCGGCCTCGAGCCATATCTTGGTCTGCATTATCCAGCCACTGACATTCCTCAAGCTGCACGCTTTTTGTTCATGAAGAATAAGGTCCGCATGATTGTTGATTGTCGTGCAAAACATGTGAAAGTACTCCAAGATGAGAAATTACAATTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCATTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGTTCTGCTTTGCAGCAGCAAAAGAGAAGGAGATTATGGGGCTTGGTAGTATGTCACAATACAACTCCGAGATTTGTTCCTTTTCCTCTTAGGTATGCCTGTGAGTTTCTAGCTCAAGTATTTGCTATTCACGTAAACAAGGAATTAGAGTTGGAAAATCAGATTATAGAAAAAAATATTCTGCGTACACAGACACTCTTGTGCGACATGCTAATGCGTGATGCTCCTTTAGGTATAGTGTCAAGGAGTCCAAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGAGATTGGGGATAACACCTAGTGACTTCCAGTTGCGGGACATTGCCTCGTGGCTTTCTGACTATCATATGGATTCAACTGGATTGAGTACTGACAGCTTGTATGATGCGGGGTACCCGGGAGCTATTGCTTTAGGTGATGAAGTGTGTGGGATGGCAGCTGTGAGGATAACTAATAATGACTTGATCTTTTGGTTTCGAGCTTACACTGCTTCAGAGCTCCGATGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGACAGCAGAAAAATGCATCCCAGATCATCTTTCAAGGCTTTTCTCGAAGTAGTCAAGACAAGAAGTCTGCCTTGGAAGGACTATGAAATGGATGCAATCCACTCTTTACAACTTATCCTCAGAAATACTTTTAAAGATACAGATGTAGCTGAAATAAATAGAAAGGCAATTCAAACGACACTTAGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTGACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCGATTTTGGCAGTTGATATAGATGGGTTAGTTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTCCCCGTGGATAAAGCTATCGGCAAACAATTGCTCACATTAGTTGAAGATTCTTCTGTAGAAATTGTCAAGAAGATGCTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATTAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGCCTAGTTGTAAATGCTTGTGCAAGCAGGGACCTGCGTGAAAATGTTGTTGGAGTGTGTTTTGTGGCACAAGATATCACTGGTCAAAAGATGGTTATGGACAAGTTCACTCGACTAGAAGGCGACTACAAAGCTATCGTAGAAAATCCCAATCCATTAATCCCTCCCATTTTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAGTTAACTGGGTGGTCGCGTGAAGAAGTAGTCGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGAGTTGTCTTGAATAATGCTATGAGCGGTCAAGATCCTGAGAAGGTTCCCTTTGGTTTCGTTGCTCGAAACGGGATGTATGTGGAATGTCTTCTATGTGTCAATAAGATCTTGGATAGAGACGGGGCAGTTACAGGGGTTTTTTGCTTTTTGCAGCTTGCTAGCCATGAGTTGCAGCAAGCACTAAATATCCAAAGATTATGTGAGCAAACTGCATTGAAGAGATTGAAAGCATTGGGATACATAAAGAGGCAGATACAAAATCCTCTGTCTGGGATCATCTTTTCAAGAAGATTATTGGAGCGCACTGAATTGGGAATAGAACAAAAACAACTTCTACATACTAGCATACACTGTCAAAAGCAGATTTCCAAGATTCTCGATGAGTCGGACCTTGATAAAATTATTGATGGGTTCATTGATTTGGAAATGGTCGAGTTTACGTTGGATGAAGTATTGACGGTATCAATTAGTCAAGTGATGATAAAGAGCAAAGGAAAAGGTATCCAGGTAGTTAATGATACTGCAGAAGAAGCCATGTCCGAGACCTTATATGGAGATAGTTTGAGGCTTCAACAAGTCTTGGCAGATTTCCTATTGATATCAGTCAATTATGCGCCAACAGGCGGCCAACTCACAATTTCAACCAACCTGACCAAGGATCAATTAGGGAAGTCGGTCCATCTGGTGCATCTGGAGTTCAGGATAACGTATGCCGGAGGAGGTATACCAGAATCGCTCCTGAACGAGATGTTTGGTAGCGATGAGGATGCGTCTGAGGAGGGTTTTAGCCTACTGATCAGTAGAAAACTGGTGAAGCTGATGAATGGAGATGTACGATACATGAGGGAAGCAGGCAAATCTAGCTTCATCATTACTGTCGAGCTTGCTGCAGCACACAAGTCGAGACCGTAG | 3375 | 42.55 | NMSSSRPCQSSSNSGRSRHSNRVIAQTSVDAKLQADFEESGGSFDYSSSVRVTSDVSGDPQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTNSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGSALQQQKRRRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGITPSDFQLRDIASWLSDYHMDSTGLSTDSLYDAGYPGAIALGDEVCGMAAVRITNNDLIFWFRAYTASELRWGGAKHEHGEKDDSRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDVAEINRKAIQTTLSDLKIEGRQELESVTSEMVRLIETATVPILAVDIDGLVNGWNTKIAELTGLPVDKAIGKQLLTLVEDSSVEIVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVENPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWSREEVVDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVPFGFVARNGMYVECLLCVNKILDRDGAVTGVFCFLQLASHELQQALNIQRLCEQTALKRLKALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKQLLHTSIHCQKQISKILDESDLDKIIDGFIDLEMVEFTLDEVLTVSISQVMIKSKGKGIQVVNDTAEEAMSETLYGDSLRLQQVLADFLLISVNYAPTGGQLTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSDEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKSRP | 1124 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 22070940 | 22076535 | + | MC08g1546 | Mch8g1989 | 695610 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g1989 | 1124 | MobiDBLite | consensus disorder prediction | 39 | 65 | - | - | |
Mch8g1989 | 1124 | Pfam | His Kinase A (phospho-acceptor) domain | 897 | 955 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Mch8g1989 | 1124 | ProSiteProfiles | PAS repeat profile. | 747 | 802 | IPR000014 | - | |
Mch8g1989 | 1124 | Gene3D | PAS domain | 75 | 322 | - | - | |
Mch8g1989 | 1124 | MobiDBLite | consensus disorder prediction | 41 | 64 | - | - | |
Mch8g1989 | 1124 | CDD | HATPase_Phy-like | 1005 | 1116 | IPR044767 | - | |
Mch8g1989 | 1124 | Pfam | PAS fold | 620 | 734 | IPR013767 | GO:0006355(InterPro) | |
Mch8g1989 | 1124 | Pfam | PAS fold | 750 | 872 | IPR013767 | GO:0006355(InterPro) | |
Mch8g1989 | 1124 | Gene3D | PAS domain | 764 | 878 | - | - | |
Mch8g1989 | 1124 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 319 | 328 | IPR013516 | - | |
Mch8g1989 | 1124 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 951 | 1113 | IPR036890 | - | |
Mch8g1989 | 1124 | SMART | HisKA_10 | 894 | 958 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
Mch8g1989 | 1124 | Gene3D | - | 406 | 579 | IPR043150 | - | |
Mch8g1989 | 1124 | ProSiteProfiles | Histidine kinase domain profile. | 901 | 1120 | IPR005467 | - | |
Mch8g1989 | 1124 | SMART | pas_2 | 619 | 685 | IPR000014 | - | |
Mch8g1989 | 1124 | SMART | pas_2 | 749 | 818 | IPR000014 | - | |
Mch8g1989 | 1124 | Pfam | PAS fold | 70 | 186 | IPR013654 | GO:0006355(InterPro) | |
Mch8g1989 | 1124 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 219 | 391 | IPR016132 | - | |
Mch8g1989 | 1124 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Mch8g1989 | 1124 | PRINTS | Phytochrome signature | 712 | 729 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
Mch8g1989 | 1124 | PRINTS | Phytochrome signature | 639 | 654 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
Mch8g1989 | 1124 | PRINTS | Phytochrome signature | 732 | 752 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
Mch8g1989 | 1124 | PRINTS | Phytochrome signature | 319 | 340 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
Mch8g1989 | 1124 | PRINTS | Phytochrome signature | 549 | 567 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
Mch8g1989 | 1124 | PRINTS | Phytochrome signature | 620 | 636 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
Mch8g1989 | 1124 | PRINTS | Phytochrome signature | 431 | 451 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
Mch8g1989 | 1124 | PRINTS | Phytochrome signature | 134 | 156 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
Mch8g1989 | 1124 | PRINTS | Phytochrome signature | 234 | 253 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
Mch8g1989 | 1124 | PRINTS | Phytochrome signature | 516 | 535 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
Mch8g1989 | 1124 | SUPERFAMILY | GAF domain-like | 409 | 586 | - | - | |
Mch8g1989 | 1124 | CDD | PAS | 628 | 734 | IPR000014 | - | |
Mch8g1989 | 1124 | CDD | PAS | 761 | 872 | IPR000014 | - | |
Mch8g1989 | 1124 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1006 | 1116 | IPR003594 | - | |
Mch8g1989 | 1124 | FunFam | Phytochrome | 406 | 538 | - | - | |
Mch8g1989 | 1124 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 75 | 187 | IPR035965 | - | |
Mch8g1989 | 1124 | FunFam | Phytochrome | 613 | 744 | - | - | |
Mch8g1989 | 1124 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 623 | 730 | IPR035965 | - | |
Mch8g1989 | 1124 | SMART | HKATPase_4 | 1006 | 1118 | IPR003594 | - | |
Mch8g1989 | 1124 | Gene3D | PAS domain | 613 | 751 | - | - | |
Mch8g1989 | 1124 | ProSiteProfiles | PAS repeat profile. | 617 | 687 | IPR000014 | - | |
Mch8g1989 | 1124 | SMART | gaf_1 | 219 | 411 | IPR003018 | GO:0005515(InterPro) | |
Mch8g1989 | 1124 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 764 | 870 | IPR035965 | - | |
Mch8g1989 | 1124 | Pfam | Phytochrome region | 414 | 587 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
Mch8g1989 | 1124 | Coils | Coil | 398 | 418 | - | - | |
Mch8g1989 | 1124 | Pfam | GAF domain | 221 | 400 | IPR003018 | GO:0005515(InterPro) | |
Mch8g1989 | 1124 | NCBIfam | PAS domain S-box protein | 624 | 740 | IPR000014 | - | |
Mch8g1989 | 1124 | SUPERFAMILY | GAF domain-like | 199 | 398 | - | - | |
Mch8g1989 | 1124 | PIRSF | Phytochrome_conventional | 1 | 1124 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) | |
Mch8g1989 | 1124 | PANTHER | OS08G0260000 PROTEIN | 2 | 995 | - | - | |
Mch8g1989 | 1124 | Gene3D | - | 935 | 1112 | IPR036890 | - | |
Mch8g1989 | 1124 | Gene3D | - | 200 | 562 | IPR029016 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch4g0317 | Mch-Chr4:2004598 | Mch8g1989 | Mch-Chr8:22070940 | 0 | dispersed | |
Mch5g0771 | Mch-Chr5:5251230 | Mch8g1989 | Mch-Chr8:22070940 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch8g1989 | K12120 | - | csv:101208491 | 2084.3 |