Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1989 AACATGTCTTCCTCTAGACCTTGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGACATAGCAACAGAGTTATTGCTCAAACATCTGTCGATGCAAAGCTCCAAGCAGATTTTGAGGAATCTGGGGGTTCATTTGACTACTCAAGTTCAGTGCGTGTCACAAGTGATGTTAGTGGAGATCCCCAACCTAGGTCGGACAAAGTTACAACAGCTTACCTTCATCACATACAGAAAGGCAAGCTTATCCAACCATTTGGTTGCTTATTGGCCTTAGATGACAAAACATTCAAGGTTATTGCATATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATTGGAACAGATGTAAGGACTATTTTCACTGCACCTAGTGCATCTGCCCTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACACTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCTGGAAAACCTTTCTATGCCATTGTGCATCGTGTCACTAACAGCTTAATCATCGACTTTGAGCCCGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTGCAATCCTATAAACTTGCTGCAAAAGCAATTACTCGATTGCAGTCCTTGCCCAGTGGGAGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAGGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAATTCCATGATGATGATCATGGAGAAGTGATCTCTGAAGTTACAAAGCCCGGCCTCGAGCCATATCTTGGTCTGCATTATCCAGCCACTGACATTCCTCAAGCTGCACGCTTTTTGTTCATGAAGAATAAGGTCCGCATGATTGTTGATTGTCGTGCAAAACATGTGAAAGTACTCCAAGATGAGAAATTACAATTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCATTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGTTCTGCTTTGCAGCAGCAAAAGAGAAGGAGATTATGGGGCTTGGTAGTATGTCACAATACAACTCCGAGATTTGTTCCTTTTCCTCTTAGGTATGCCTGTGAGTTTCTAGCTCAAGTATTTGCTATTCACGTAAACAAGGAATTAGAGTTGGAAAATCAGATTATAGAAAAAAATATTCTGCGTACACAGACACTCTTGTGCGACATGCTAATGCGTGATGCTCCTTTAGGTATAGTGTCAAGGAGTCCAAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGAGATTGGGGATAACACCTAGTGACTTCCAGTTGCGGGACATTGCCTCGTGGCTTTCTGACTATCATATGGATTCAACTGGATTGAGTACTGACAGCTTGTATGATGCGGGGTACCCGGGAGCTATTGCTTTAGGTGATGAAGTGTGTGGGATGGCAGCTGTGAGGATAACTAATAATGACTTGATCTTTTGGTTTCGAGCTTACACTGCTTCAGAGCTCCGATGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGACAGCAGAAAAATGCATCCCAGATCATCTTTCAAGGCTTTTCTCGAAGTAGTCAAGACAAGAAGTCTGCCTTGGAAGGACTATGAAATGGATGCAATCCACTCTTTACAACTTATCCTCAGAAATACTTTTAAAGATACAGATGTAGCTGAAATAAATAGAAAGGCAATTCAAACGACACTTAGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTGACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCGATTTTGGCAGTTGATATAGATGGGTTAGTTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTCCCCGTGGATAAAGCTATCGGCAAACAATTGCTCACATTAGTTGAAGATTCTTCTGTAGAAATTGTCAAGAAGATGCTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATTAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGCCTAGTTGTAAATGCTTGTGCAAGCAGGGACCTGCGTGAAAATGTTGTTGGAGTGTGTTTTGTGGCACAAGATATCACTGGTCAAAAGATGGTTATGGACAAGTTCACTCGACTAGAAGGCGACTACAAAGCTATCGTAGAAAATCCCAATCCATTAATCCCTCCCATTTTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAGTTAACTGGGTGGTCGCGTGAAGAAGTAGTCGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGAGTTGTCTTGAATAATGCTATGAGCGGTCAAGATCCTGAGAAGGTTCCCTTTGGTTTCGTTGCTCGAAACGGGATGTATGTGGAATGTCTTCTATGTGTCAATAAGATCTTGGATAGAGACGGGGCAGTTACAGGGGTTTTTTGCTTTTTGCAGCTTGCTAGCCATGAGTTGCAGCAAGCACTAAATATCCAAAGATTATGTGAGCAAACTGCATTGAAGAGATTGAAAGCATTGGGATACATAAAGAGGCAGATACAAAATCCTCTGTCTGGGATCATCTTTTCAAGAAGATTATTGGAGCGCACTGAATTGGGAATAGAACAAAAACAACTTCTACATACTAGCATACACTGTCAAAAGCAGATTTCCAAGATTCTCGATGAGTCGGACCTTGATAAAATTATTGATGGGTTCATTGATTTGGAAATGGTCGAGTTTACGTTGGATGAAGTATTGACGGTATCAATTAGTCAAGTGATGATAAAGAGCAAAGGAAAAGGTATCCAGGTAGTTAATGATACTGCAGAAGAAGCCATGTCCGAGACCTTATATGGAGATAGTTTGAGGCTTCAACAAGTCTTGGCAGATTTCCTATTGATATCAGTCAATTATGCGCCAACAGGCGGCCAACTCACAATTTCAACCAACCTGACCAAGGATCAATTAGGGAAGTCGGTCCATCTGGTGCATCTGGAGTTCAGGATAACGTATGCCGGAGGAGGTATACCAGAATCGCTCCTGAACGAGATGTTTGGTAGCGATGAGGATGCGTCTGAGGAGGGTTTTAGCCTACTGATCAGTAGAAAACTGGTGAAGCTGATGAATGGAGATGTACGATACATGAGGGAAGCAGGCAAATCTAGCTTCATCATTACTGTCGAGCTTGCTGCAGCACACAAGTCGAGACCGTAG 3375 42.55 NMSSSRPCQSSSNSGRSRHSNRVIAQTSVDAKLQADFEESGGSFDYSSSVRVTSDVSGDPQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTNSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGSALQQQKRRRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGITPSDFQLRDIASWLSDYHMDSTGLSTDSLYDAGYPGAIALGDEVCGMAAVRITNNDLIFWFRAYTASELRWGGAKHEHGEKDDSRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDVAEINRKAIQTTLSDLKIEGRQELESVTSEMVRLIETATVPILAVDIDGLVNGWNTKIAELTGLPVDKAIGKQLLTLVEDSSVEIVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVENPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWSREEVVDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVPFGFVARNGMYVECLLCVNKILDRDGAVTGVFCFLQLASHELQQALNIQRLCEQTALKRLKALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKQLLHTSIHCQKQISKILDESDLDKIIDGFIDLEMVEFTLDEVLTVSISQVMIKSKGKGIQVVNDTAEEAMSETLYGDSLRLQQVLADFLLISVNYAPTGGQLTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSDEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKSRP 1124
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22070940 22076535 + MC08g1546 Mch8g1989 695610

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1989 1124 MobiDBLite consensus disorder prediction 39 65 - -
Mch8g1989 1124 Pfam His Kinase A (phospho-acceptor) domain 897 955 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch8g1989 1124 ProSiteProfiles PAS repeat profile. 747 802 IPR000014 -
Mch8g1989 1124 Gene3D PAS domain 75 322 - -
Mch8g1989 1124 MobiDBLite consensus disorder prediction 41 64 - -
Mch8g1989 1124 CDD HATPase_Phy-like 1005 1116 IPR044767 -
Mch8g1989 1124 Pfam PAS fold 620 734 IPR013767 GO:0006355(InterPro)
Mch8g1989 1124 Pfam PAS fold 750 872 IPR013767 GO:0006355(InterPro)
Mch8g1989 1124 Gene3D PAS domain 764 878 - -
Mch8g1989 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Mch8g1989 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 951 1113 IPR036890 -
Mch8g1989 1124 SMART HisKA_10 894 958 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch8g1989 1124 Gene3D - 406 579 IPR043150 -
Mch8g1989 1124 ProSiteProfiles Histidine kinase domain profile. 901 1120 IPR005467 -
Mch8g1989 1124 SMART pas_2 619 685 IPR000014 -
Mch8g1989 1124 SMART pas_2 749 818 IPR000014 -
Mch8g1989 1124 Pfam PAS fold 70 186 IPR013654 GO:0006355(InterPro)
Mch8g1989 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 391 IPR016132 -
Mch8g1989 1124 MobiDBLite consensus disorder prediction 1 25 - -
Mch8g1989 1124 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 SUPERFAMILY GAF domain-like 409 586 - -
Mch8g1989 1124 CDD PAS 628 734 IPR000014 -
Mch8g1989 1124 CDD PAS 761 872 IPR000014 -
Mch8g1989 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1116 IPR003594 -
Mch8g1989 1124 FunFam Phytochrome 406 538 - -
Mch8g1989 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 187 IPR035965 -
Mch8g1989 1124 FunFam Phytochrome 613 744 - -
Mch8g1989 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Mch8g1989 1124 SMART HKATPase_4 1006 1118 IPR003594 -
Mch8g1989 1124 Gene3D PAS domain 613 751 - -
Mch8g1989 1124 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Mch8g1989 1124 SMART gaf_1 219 411 IPR003018 GO:0005515(InterPro)
Mch8g1989 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Mch8g1989 1124 Pfam Phytochrome region 414 587 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 Coils Coil 398 418 - -
Mch8g1989 1124 Pfam GAF domain 221 400 IPR003018 GO:0005515(InterPro)
Mch8g1989 1124 NCBIfam PAS domain S-box protein 624 740 IPR000014 -
Mch8g1989 1124 SUPERFAMILY GAF domain-like 199 398 - -
Mch8g1989 1124 PIRSF Phytochrome_conventional 1 1124 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Mch8g1989 1124 PANTHER OS08G0260000 PROTEIN 2 995 - -
Mch8g1989 1124 Gene3D - 935 1112 IPR036890 -
Mch8g1989 1124 Gene3D - 200 562 IPR029016 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1989 K12120 - - csv:101208491 2084.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0317 Mch-Chr4:2004598 Mch8g1989 Mch-Chr8:22070940 0 dispersed
Mch5g0771 Mch-Chr5:5251230 Mch8g1989 Mch-Chr8:22070940 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g1771 . 93 1286 Histidine Kinase Gene Family AT2G17820 63.9 0.0e+00 1432.9
Mch9g1183 . 20 1006 Histidine Kinase Gene Family AT2G01830 70.7 0.0e+00 1324.7
Mch4g1467 . 24 987 Histidine Kinase Gene Family AT2G01830 72.6 0.0e+00 1322.8
Mch4g0340 . 189 1180 Histidine Kinase Gene Family AT2G01830 52.7 2.2e-274 942.2
Mch7g0079 . 63 1007 Histidine Kinase Gene Family AT2G01830 52.9 1.3e-269 926.4
Mch2g0478 . 304 1258 Histidine Kinase Gene Family AT2G01830 51.8 2.5e-265 912.1
Mch11g0473 . 1 992 Histidine Kinase Gene Family AT5G10720 58.5 6.4e-294 1006.9
Mch8g1989 . 2 1121 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1824.7
Mch4g0317 . 18 1136 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1230.7
Mch5g0771 . 27 1120 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1179.5
Mch5g0771 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.3 0.0e+00 1661.4
Mch3g1027 . 15 1046 Histidine Kinase Gene Family AT2G18790 59.5 0.0e+00 1237.6
Mch8g1989 . 22 1055 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1098.2
Mch4g0317 . 26 1089 Histidine Kinase Gene Family AT2G18790 51.2 0.0e+00 1078.2
Mch4g0317 . 12 1135 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1370.5
Mch5g0771 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1150.2
Mch8g1989 . 10 1115 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1115.9
Mch5g0771 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1701.0
Mch3g1027 . 25 1108 Histidine Kinase Gene Family AT4G16250 58.1 0.0e+00 1273.8
Mch8g1989 . 9 1116 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1146.7
Mch4g0317 . 26 1135 Histidine Kinase Gene Family AT4G16250 51.2 0.0e+00 1114.8
Mch3g1027 . 37 1109 Histidine Kinase Gene Family AT4G18130 62.2 0.0e+00 1339.3
Mch5g0771 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1260.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002826 1 3 1 1 1 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 1 3 2 1 56