Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g1989 AACATGTCTTCCTCTAGACCTTGCCAGTCTTCTAGCAACTCTGGGCGGTCAAGACATAGCAACAGAGTTATTGCTCAAACATCTGTCGATGCAAAGCTCCAAGCAGATTTTGAGGAATCTGGGGGTTCATTTGACTACTCAAGTTCAGTGCGTGTCACAAGTGATGTTAGTGGAGATCCCCAACCTAGGTCGGACAAAGTTACAACAGCTTACCTTCATCACATACAGAAAGGCAAGCTTATCCAACCATTTGGTTGCTTATTGGCCTTAGATGACAAAACATTCAAGGTTATTGCATATAGTGAAAATGCCCCTGAAATGTTGACCATGGTGAGTCATGCTGTCCCAAGCATGGGGGATTACCCTGTTCTTGGCATTGGAACAGATGTAAGGACTATTTTCACTGCACCTAGTGCATCTGCCCTGTTGAAGGCCTTGGGCTTTGGGGAGGTTACACTTCTTAATCCTATCCTAGTGCATTGCAAGACTTCTGGAAAACCTTTCTATGCCATTGTGCATCGTGTCACTAACAGCTTAATCATCGACTTTGAGCCCGTGAAGCCTTATGAAGTTCCAGTGACAGCAGCTGGAGCCCTGCAATCCTATAAACTTGCTGCAAAAGCAATTACTCGATTGCAGTCCTTGCCCAGTGGGAGCATGGCTAGGCTTTGTGACACAATGGTTCAAGAGGTTTTTGAACTAACAGGTTATGATAGAGTCATGGCTTATAAATTCCATGATGATGATCATGGAGAAGTGATCTCTGAAGTTACAAAGCCCGGCCTCGAGCCATATCTTGGTCTGCATTATCCAGCCACTGACATTCCTCAAGCTGCACGCTTTTTGTTCATGAAGAATAAGGTCCGCATGATTGTTGATTGTCGTGCAAAACATGTGAAAGTACTCCAAGATGAGAAATTACAATTTGATCTAACTTTATGCGGTTCAACATTAAGGGCCCCACACAGTTGCCATTTACAGTATATGGAAAACATGAACTCTATTGCCTCTTTGGTTATGGCAGTTGTGGTTAATGAAGGGGATGAAGATGGTGAGGGTTCTGCTTTGCAGCAGCAAAAGAGAAGGAGATTATGGGGCTTGGTAGTATGTCACAATACAACTCCGAGATTTGTTCCTTTTCCTCTTAGGTATGCCTGTGAGTTTCTAGCTCAAGTATTTGCTATTCACGTAAACAAGGAATTAGAGTTGGAAAATCAGATTATAGAAAAAAATATTCTGCGTACACAGACACTCTTGTGCGACATGCTAATGCGTGATGCTCCTTTAGGTATAGTGTCAAGGAGTCCAAACATAATGGATCTTGTCAAATCTGATGGGGCTGCCTTGTTATATAAGAACAAAATTTGGAGATTGGGGATAACACCTAGTGACTTCCAGTTGCGGGACATTGCCTCGTGGCTTTCTGACTATCATATGGATTCAACTGGATTGAGTACTGACAGCTTGTATGATGCGGGGTACCCGGGAGCTATTGCTTTAGGTGATGAAGTGTGTGGGATGGCAGCTGTGAGGATAACTAATAATGACTTGATCTTTTGGTTTCGAGCTTACACTGCTTCAGAGCTCCGATGGGGTGGAGCAAAGCATGAACATGGTGAAAAGGATGACAGCAGAAAAATGCATCCCAGATCATCTTTCAAGGCTTTTCTCGAAGTAGTCAAGACAAGAAGTCTGCCTTGGAAGGACTATGAAATGGATGCAATCCACTCTTTACAACTTATCCTCAGAAATACTTTTAAAGATACAGATGTAGCTGAAATAAATAGAAAGGCAATTCAAACGACACTTAGTGACCTAAAAATTGAAGGGAGGCAAGAATTGGAATCAGTGACAAGTGAGATGGTCAGGTTAATTGAGACAGCTACTGTGCCGATTTTGGCAGTTGATATAGATGGGTTAGTTAATGGGTGGAATACAAAAATTGCTGAATTGACTGGACTCCCCGTGGATAAAGCTATCGGCAAACAATTGCTCACATTAGTTGAAGATTCTTCTGTAGAAATTGTCAAGAAGATGCTGTTCTTGGCATTGCAAGGACAAGAAGAGCAAAACGTTCAATTTGAGATTAAGACACATGGTTCTCATATTGAGGTTGGCTCCATCAGCCTAGTTGTAAATGCTTGTGCAAGCAGGGACCTGCGTGAAAATGTTGTTGGAGTGTGTTTTGTGGCACAAGATATCACTGGTCAAAAGATGGTTATGGACAAGTTCACTCGACTAGAAGGCGACTACAAAGCTATCGTAGAAAATCCCAATCCATTAATCCCTCCCATTTTTGGTTCAGATGAATTTGGATGGTGCTCAGAGTGGAATCCTGCAATGACAAAGTTAACTGGGTGGTCGCGTGAAGAAGTAGTCGATAAGATGCTTTTGGGAGAGGTTTTTGGCGCTCACAAATCATGTTGTCGTTTAAAGAATCAAGAAGCTTTTGTTAATCTTGGAGTTGTCTTGAATAATGCTATGAGCGGTCAAGATCCTGAGAAGGTTCCCTTTGGTTTCGTTGCTCGAAACGGGATGTATGTGGAATGTCTTCTATGTGTCAATAAGATCTTGGATAGAGACGGGGCAGTTACAGGGGTTTTTTGCTTTTTGCAGCTTGCTAGCCATGAGTTGCAGCAAGCACTAAATATCCAAAGATTATGTGAGCAAACTGCATTGAAGAGATTGAAAGCATTGGGATACATAAAGAGGCAGATACAAAATCCTCTGTCTGGGATCATCTTTTCAAGAAGATTATTGGAGCGCACTGAATTGGGAATAGAACAAAAACAACTTCTACATACTAGCATACACTGTCAAAAGCAGATTTCCAAGATTCTCGATGAGTCGGACCTTGATAAAATTATTGATGGGTTCATTGATTTGGAAATGGTCGAGTTTACGTTGGATGAAGTATTGACGGTATCAATTAGTCAAGTGATGATAAAGAGCAAAGGAAAAGGTATCCAGGTAGTTAATGATACTGCAGAAGAAGCCATGTCCGAGACCTTATATGGAGATAGTTTGAGGCTTCAACAAGTCTTGGCAGATTTCCTATTGATATCAGTCAATTATGCGCCAACAGGCGGCCAACTCACAATTTCAACCAACCTGACCAAGGATCAATTAGGGAAGTCGGTCCATCTGGTGCATCTGGAGTTCAGGATAACGTATGCCGGAGGAGGTATACCAGAATCGCTCCTGAACGAGATGTTTGGTAGCGATGAGGATGCGTCTGAGGAGGGTTTTAGCCTACTGATCAGTAGAAAACTGGTGAAGCTGATGAATGGAGATGTACGATACATGAGGGAAGCAGGCAAATCTAGCTTCATCATTACTGTCGAGCTTGCTGCAGCACACAAGTCGAGACCGTAG 3375 42.55 NMSSSRPCQSSSNSGRSRHSNRVIAQTSVDAKLQADFEESGGSFDYSSSVRVTSDVSGDPQPRSDKVTTAYLHHIQKGKLIQPFGCLLALDDKTFKVIAYSENAPEMLTMVSHAVPSMGDYPVLGIGTDVRTIFTAPSASALLKALGFGEVTLLNPILVHCKTSGKPFYAIVHRVTNSLIIDFEPVKPYEVPVTAAGALQSYKLAAKAITRLQSLPSGSMARLCDTMVQEVFELTGYDRVMAYKFHDDDHGEVISEVTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRAKHVKVLQDEKLQFDLTLCGSTLRAPHSCHLQYMENMNSIASLVMAVVVNEGDEDGEGSALQQQKRRRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKELELENQIIEKNILRTQTLLCDMLMRDAPLGIVSRSPNIMDLVKSDGAALLYKNKIWRLGITPSDFQLRDIASWLSDYHMDSTGLSTDSLYDAGYPGAIALGDEVCGMAAVRITNNDLIFWFRAYTASELRWGGAKHEHGEKDDSRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNTFKDTDVAEINRKAIQTTLSDLKIEGRQELESVTSEMVRLIETATVPILAVDIDGLVNGWNTKIAELTGLPVDKAIGKQLLTLVEDSSVEIVKKMLFLALQGQEEQNVQFEIKTHGSHIEVGSISLVVNACASRDLRENVVGVCFVAQDITGQKMVMDKFTRLEGDYKAIVENPNPLIPPIFGSDEFGWCSEWNPAMTKLTGWSREEVVDKMLLGEVFGAHKSCCRLKNQEAFVNLGVVLNNAMSGQDPEKVPFGFVARNGMYVECLLCVNKILDRDGAVTGVFCFLQLASHELQQALNIQRLCEQTALKRLKALGYIKRQIQNPLSGIIFSRRLLERTELGIEQKQLLHTSIHCQKQISKILDESDLDKIIDGFIDLEMVEFTLDEVLTVSISQVMIKSKGKGIQVVNDTAEEAMSETLYGDSLRLQQVLADFLLISVNYAPTGGQLTISTNLTKDQLGKSVHLVHLEFRITYAGGGIPESLLNEMFGSDEDASEEGFSLLISRKLVKLMNGDVRYMREAGKSSFIITVELAAAHKSRP 1124
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 22070940 22076535 + MC08g1546 Mch8g1989 695610
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch8g1989 1124 MobiDBLite consensus disorder prediction 39 65 - -
Mch8g1989 1124 Pfam His Kinase A (phospho-acceptor) domain 897 955 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch8g1989 1124 ProSiteProfiles PAS repeat profile. 747 802 IPR000014 -
Mch8g1989 1124 Gene3D PAS domain 75 322 - -
Mch8g1989 1124 MobiDBLite consensus disorder prediction 41 64 - -
Mch8g1989 1124 CDD HATPase_Phy-like 1005 1116 IPR044767 -
Mch8g1989 1124 Pfam PAS fold 620 734 IPR013767 GO:0006355(InterPro)
Mch8g1989 1124 Pfam PAS fold 750 872 IPR013767 GO:0006355(InterPro)
Mch8g1989 1124 Gene3D PAS domain 764 878 - -
Mch8g1989 1124 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Mch8g1989 1124 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 951 1113 IPR036890 -
Mch8g1989 1124 SMART HisKA_10 894 958 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch8g1989 1124 Gene3D - 406 579 IPR043150 -
Mch8g1989 1124 ProSiteProfiles Histidine kinase domain profile. 901 1120 IPR005467 -
Mch8g1989 1124 SMART pas_2 619 685 IPR000014 -
Mch8g1989 1124 SMART pas_2 749 818 IPR000014 -
Mch8g1989 1124 Pfam PAS fold 70 186 IPR013654 GO:0006355(InterPro)
Mch8g1989 1124 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 391 IPR016132 -
Mch8g1989 1124 MobiDBLite consensus disorder prediction 1 25 - -
Mch8g1989 1124 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 SUPERFAMILY GAF domain-like 409 586 - -
Mch8g1989 1124 CDD PAS 628 734 IPR000014 -
Mch8g1989 1124 CDD PAS 761 872 IPR000014 -
Mch8g1989 1124 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1116 IPR003594 -
Mch8g1989 1124 FunFam Phytochrome 406 538 - -
Mch8g1989 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 187 IPR035965 -
Mch8g1989 1124 FunFam Phytochrome 613 744 - -
Mch8g1989 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Mch8g1989 1124 SMART HKATPase_4 1006 1118 IPR003594 -
Mch8g1989 1124 Gene3D PAS domain 613 751 - -
Mch8g1989 1124 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Mch8g1989 1124 SMART gaf_1 219 411 IPR003018 GO:0005515(InterPro)
Mch8g1989 1124 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Mch8g1989 1124 Pfam Phytochrome region 414 587 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch8g1989 1124 Coils Coil 398 418 - -
Mch8g1989 1124 Pfam GAF domain 221 400 IPR003018 GO:0005515(InterPro)
Mch8g1989 1124 NCBIfam PAS domain S-box protein 624 740 IPR000014 -
Mch8g1989 1124 SUPERFAMILY GAF domain-like 199 398 - -
Mch8g1989 1124 PIRSF Phytochrome_conventional 1 1124 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Mch8g1989 1124 PANTHER OS08G0260000 PROTEIN 2 995 - -
Mch8g1989 1124 Gene3D - 935 1112 IPR036890 -
Mch8g1989 1124 Gene3D - 200 562 IPR029016 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0317 Mch-Chr4:2004598 Mch8g1989 Mch-Chr8:22070940 0 dispersed
Mch5g0771 Mch-Chr5:5251230 Mch8g1989 Mch-Chr8:22070940 0 dispersed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g1989 K12120 - csv:101208491 2084.3