Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2008 AAGTACAAAGGCCCCTGCATGGCAACGAACCCAATCGATCGATGCTGGAGGTGCGATCCAAACTGGTCGAAAAACCGAAAGAAGCTGGCGGACTGCGTGCTCGGATTCGGACACAAGACCACCGGCGGGAAGAAGGGAAGATTCTACAAGGTGACCGACGCATCGGACGACGACTTGGTGAACCCGAAGCCCGGAACCCTCCGGTACGGCGTGATCCAAAAGGGACCGCTGTGGATCGTGTTCACGCGCAGCATGGTGATCCGGCTAACACAGGAGCTGATGATCTCGAGCGACAAGACCATCGACGCCCGTGGGTACAACGTGCACGTGTCGTTCGGCGCGGGGCTGACCCTCCACTACGTGAACAACGTGATCATCCACGGGCTCCACGTGCACGACATCGCGTCGAAATCTGGCGGAATGATCCGCGACGAGGTGGACCACTACGGGTTGAGGACCCAGAGCGACGGCGACGGGATCTCGATCTTCGGGTCGACGAACGTGTGGATCGACCACGTGTCGATGTACAACTGCCAGGACGGGCTGATAGACGCGATCATGGGGTCGACGGCGATCACGATCTCGAACTCCCACTTCACGCACCACAACGAGGTGATGCTGTTCGGGGCGAGCGACAGCTACTCCGGGGACAAGGTGATGCAGATAACGCTGGCGTTCAACCACTTCGGGCGGGGGCTGGTGCAGAGGATGCCGCGGTGCCGGTGGGGGTTCTTCCACGTGGTGAACAACGACTACACGCATTGGCTTATGTACGCGATCGGGGGCAGCCAGCACCCGACCATCATCAGCCAGGGGAACCGGTTCATCGCGCCGCCCAACCCGAACGCGAAGCAGGTGACGAAGAGGGACTACGCGCCGGAGAGCGAGTGGAAGAAGTGGACGTGGAAATCGGAGGGGGATTTGATGATGAATGGGGCCTACTTCCAGAAGTCGGGAGACCAGAGGAAGAGCATGCACGGTTTCTCAAAGGACGACATGATCGCGTACAAGCCCGGATCCTACGTCAGGAGACTCGTACGCTTCGCTGGCACCCTTGAGTGCCGCAAGGGCAAACCCTGC 1080 60.09 KYKGPCMATNPIDRCWRCDPNWSKNRKKLADCVLGFGHKTTGGKKGRFYKVTDASDDDLVNPKPGTLRYGVIQKGPLWIVFTRSMVIRLTQELMISSDKTIDARGYNVHVSFGAGLTLHYVNNVIIHGLHVHDIASKSGGMIRDEVDHYGLRTQSDGDGISIFGSTNVWIDHVSMYNCQDGLIDAIMGSTAITISNSHFTHHNEVMLFGASDSYSGDKVMQITLAFNHFGRGLVQRMPRCRWGFFHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPPNPNAKQVTKRDYAPESEWKKWTWKSEGDLMMNGAYFQKSGDQRKSMHGFSKDDMIAYKPGSYVRRLVRFAGTLECRKGKPC 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22357645 22358724 - MC08g1555 Mch8g2008 695629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2008 360 Pfam Pectate lyase 119 275 IPR002022 -
Mch8g2008 360 PANTHER PECTATE LYASE 18-RELATED 6 358 IPR045032 GO:0030570(InterPro)
Mch8g2008 360 Gene3D - 9 353 IPR012334 -
Mch8g2008 360 SMART amb_all 84 281 IPR002022 -
Mch8g2008 360 SUPERFAMILY Pectin lyase-like 5 354 IPR011050 -
Mch8g2008 360 PRINTS Pollen allergen Amb family signature 92 108 IPR018082 -
Mch8g2008 360 PRINTS Pollen allergen Amb family signature 32 49 IPR018082 -
Mch8g2008 360 PRINTS Pollen allergen Amb family signature 56 81 IPR018082 -
Mch8g2008 360 PRINTS Pollen allergen Amb family signature 156 177 IPR018082 -
Mch8g2008 360 PRINTS Pollen allergen Amb family signature 258 277 IPR018082 -
Mch8g2008 360 PRINTS Pollen allergen Amb family signature 236 255 IPR018082 -
Mch8g2008 360 PRINTS Pollen allergen Amb family signature 300 324 IPR018082 -
Mch8g2008 360 PRINTS Pollen allergen Amb family signature 331 354 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1622 Mch-Chr8:13220294 Mch8g2008 Mch-Chr8:22357645 8.88E-216 dispersed
Mch8g2008 Mch-Chr8:22357645 Mch9g1816 Mch-Chr9:19952755 1.30E-142 dispersed
Mch8g2008 Mch-Chr8:22357645 Mch9g2162 Mch-Chr9:22307006 5.91E-208 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2008 K01728 - csv:101217922 632.098