Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2024 ATGCTGCGACTACAATGGCTTTCTTCTTCTTTGCTTCCACCATTATTAAACCCCGAGCTCTCGCCGGAAACCTCGCATCTTTGTCCCAACCGTAGACTCTGTACCCTTAATTCCTCTCGTCCACTCCTCACTCTAACCGCTACACGAAAACCGTCTCCAAAATGCCAATACTCATGGAGCACGCAGCAGCAGCAGCCGCCGCCGTCCGAACCTGGTTCTCAGGCCCATTCATTTTCTCCACAAACTCGCGCCGGAGCTGCCGGAGCGTTGCCGCCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGGAAGGCCGTTCTTACGGTGGAGCCTAGGCCTCCAGAATTTACACCTTTGGATGTATGGGCGTTCAAACTATCCAGGGAAGGATTTGTATTGCTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGTAGAAAACAGGTATTCTCATTATCAGTGACGGAATTGGGAAGTCTAATTGCCCTTGGCCTGAGAGACTCTTGTGAATTTTTTCACGATCCCTATAAGGGAAAAAGCGAGGAAGGGAAGGTCAGAAAGATATTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCATTTCTTCAATCTCAGCGTTCAAAACAAGCTAATCAACATGGATGAGAGCATTTATATTCCCATCACTAAAGCAGAGTATACCGTACTTGTTGAGGCTTTCAAGTTTATCCTGCCTCACCTTATGGGTTGGCATATGATTTCGAACACCATGACGAGGGCAGAAGATAGCGGCCGAGTAAATAACGCGAATCCTAGATATGGTGGAGACTTTGAATGGAGCAGATAG 834 47.6 MLRLQWLSSSLLPPLLNPELSPETSHLCPNRRLCTLNSSRPLLTLTATRKPSPKCQYSWSTQQQQPPPSEPGSQAHSFSPQTRAGAAGALPPRFFVGHSIYKGKAVLTVEPRPPEFTPLDVWAFKLSREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGLRDSCEFFHDPYKGKSEEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKAEYTVLVEAFKFILPHLMGWHMISNTMTRAEDSGRVNNANPRYGGDFEWSR 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22639439 22643185 + MC08g1564 Mch8g2024 695645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2024 277 MobiDBLite consensus disorder prediction 52 81 - -
Mch8g2024 277 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 85 260 - -
Mch8g2024 277 MobiDBLite consensus disorder prediction 52 84 - -
Mch8g2024 277 SUPERFAMILY ssDNA-binding transcriptional regulator domain 92 277 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch8g2024 277 Pfam Whirly transcription factor 100 234 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Mch8g2024 277 Gene3D Transcriptional Coactivator Pc4; Chain A 85 258 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch8g2024 277 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 43 277 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2024 K26559 - - csv:101203474 435.261
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1732 Mch-Chr11:16494870 Mch8g2024 Mch-Chr8:22639439 6.39E-49 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2024 . 50 278 Whirly Transcription Factor Family AT1G14410 65.1 1.1e-84 310.1
Mch11g1732 . 72 257 Whirly Transcription Factor Family AT1G71260 57.5 5.9e-58 221.1
Mch8g2024 . 78 278 Whirly Transcription Factor Family AT2G02740 70.8 2.1e-83 305.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007539 1 2 0 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43889 PF08536 Whirly 8.40E-58 CL0609 Mch TF