Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2024 ATGCTGCGACTACAATGGCTTTCTTCTTCTTTGCTTCCACCATTATTAAACCCCGAGCTCTCGCCGGAAACCTCGCATCTTTGTCCCAACCGTAGACTCTGTACCCTTAATTCCTCTCGTCCACTCCTCACTCTAACCGCTACACGAAAACCGTCTCCAAAATGCCAATACTCATGGAGCACGCAGCAGCAGCAGCCGCCGCCGTCCGAACCTGGTTCTCAGGCCCATTCATTTTCTCCACAAACTCGCGCCGGAGCTGCCGGAGCGTTGCCGCCAAGGTTTTTTGTCGGTCATTCGATATACAAAGGGAAGGCCGTTCTTACGGTGGAGCCTAGGCCTCCAGAATTTACACCTTTGGATGTATGGGCGTTCAAACTATCCAGGGAAGGATTTGTATTGCTTCAGTTTGCCCCTGCAGCTGGTGTTCGTCAATATGATTGGAGTAGAAAACAGGTATTCTCATTATCAGTGACGGAATTGGGAAGTCTAATTGCCCTTGGCCTGAGAGACTCTTGTGAATTTTTTCACGATCCCTATAAGGGAAAAAGCGAGGAAGGGAAGGTCAGAAAGATATTAAAAGTGGAGCCTCTTCCGGATGGTTCTGGCCATTTCTTCAATCTCAGCGTTCAAAACAAGCTAATCAACATGGATGAGAGCATTTATATTCCCATCACTAAAGCAGAGTATACCGTACTTGTTGAGGCTTTCAAGTTTATCCTGCCTCACCTTATGGGTTGGCATATGATTTCGAACACCATGACGAGGGCAGAAGATAGCGGCCGAGTAAATAACGCGAATCCTAGATATGGTGGAGACTTTGAATGGAGCAGATAG 834 47.6 MLRLQWLSSSLLPPLLNPELSPETSHLCPNRRLCTLNSSRPLLTLTATRKPSPKCQYSWSTQQQQPPPSEPGSQAHSFSPQTRAGAAGALPPRFFVGHSIYKGKAVLTVEPRPPEFTPLDVWAFKLSREGFVLLQFAPAAGVRQYDWSRKQVFSLSVTELGSLIALGLRDSCEFFHDPYKGKSEEGKVRKILKVEPLPDGSGHFFNLSVQNKLINMDESIYIPITKAEYTVLVEAFKFILPHLMGWHMISNTMTRAEDSGRVNNANPRYGGDFEWSR 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22639439 22643185 + MC08g1564 Mch8g2024 695645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2024 277 MobiDBLite consensus disorder prediction 52 81 - -
Mch8g2024 277 FunFam Single-stranded DNA-binding protein WHY2, mitochondrial 85 260 - -
Mch8g2024 277 MobiDBLite consensus disorder prediction 52 84 - -
Mch8g2024 277 SUPERFAMILY ssDNA-binding transcriptional regulator domain 92 277 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch8g2024 277 Pfam Whirly transcription factor 100 234 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
Mch8g2024 277 Gene3D Transcriptional Coactivator Pc4; Chain A 85 258 IPR009044 GO:0003677(InterPro)|GO:0006355(InterPro)
Mch8g2024 277 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 43 277 IPR013742 GO:0003697(InterPro)|GO:0006355(InterPro)|GO:0006952(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1732 Mch-Chr11:16494870 Mch8g2024 Mch-Chr8:22639439 6.39E-49 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43889 PF08536 Whirly 8.40E-58 CL0609 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2024 K26559 - csv:101203474 435.261