Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch8g2038 | ATGAACAGACATCGATGGACAGGACGATTCGAAGCTCATTTATGGGACAAAGGATCTTGGAATCCAACACAAAGGAAGAAGGGAAAGCAAGTTTATTTAGGAGCTTATGATGAAGAAGAATCAGCTGCTAGAGCATATGACTTGGCTGCACTCAAGTATTGGGGAACATCAACTTTCACTAATTTTCCGACATCTGATTATGAGGAAGAAGTTAGGATAATGAAAACTATGACAAAGGAGGAATATTTGGCCTCCTTAAGAAGGAAAAGCAGTGGTTTCTCTAGAGGTGTATCTAAGTATCGGGGTGTTGCGAGGCACCATCACAATGGGAGGTGGGAAGCAAGAATAGGAAGAGTATTTGGGAACAAGTATCTCTACCTTGGAACTTACAGCACACAAGAGGAAGCAGCAAGAGCATACGACATGGCAGCAATAGAATACAGAGGCATAAACGCAGTCACCAACTTCGAGCTCAGCAGCTACATAACATGGCTTAAACCA | 501 | 42.71 | MNRHRWTGRFEAHLWDKGSWNPTQRKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPTSDYEEEVRIMKTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFELSSYITWLKP | 167 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 22867643 | 22872794 | + | MC08g1571 | Mch8g2038 | 695659 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch8g2038 | 167 | SMART | rav1_2 | 99 | 163 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch8g2038 | 167 | SMART | rav1_2 | 3 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch8g2038 | 167 | CDD | AP2 | 3 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch8g2038 | 167 | Gene3D | AP2/ERF domain | 98 | 159 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch8g2038 | 167 | Gene3D | AP2/ERF domain | 1 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch8g2038 | 167 | Pfam | AP2 domain | 98 | 149 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch8g2038 | 167 | Pfam | AP2 domain | 3 | 55 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch8g2038 | 167 | CDD | AP2 | 98 | 159 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch8g2038 | 167 | SUPERFAMILY | DNA-binding domain | 98 | 158 | IPR016177 | GO:0003677(InterPro) | |
| Mch8g2038 | 167 | FunFam | AP2-like ethylene-responsive transcription factor | 98 | 159 | - | - | |
| Mch8g2038 | 167 | SUPERFAMILY | DNA-binding domain | 3 | 65 | IPR016177 | GO:0003677(InterPro) | |
| Mch8g2038 | 167 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 2 | 165 | - | - | |
| Mch8g2038 | 167 | PRINTS | Ethylene responsive element binding protein signature | 139 | 159 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch8g2038 | 167 | PRINTS | Ethylene responsive element binding protein signature | 100 | 111 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch8g2038 | 167 | ProSiteProfiles | AP2/ERF domain profile. | 99 | 157 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
| Mch8g2038 | 167 | ProSiteProfiles | AP2/ERF domain profile. | 1 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch5g1789 | Mch-Chr5:18324343 | Mch8g2038 | Mch-Chr8:22867643 | 2.34E-48 | dispersed | |
| Mch8g1623 | Mch-Chr8:13240220 | Mch8g2038 | Mch-Chr8:22867643 | 5.37E-103 | dispersed | |
| Mch8g2038 | Mch-Chr8:22867643 | Mch9g1891 | Mch-Chr9:20537313 | 5.65E-89 | dispersed | |
| Mch8g2038 | Mch-Chr8:22867643 | Mch8g1031 | Mch-Chr8:7280075 | 5.72E-71 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43890 | PF00847 | AP2 | 5.60E-10 | CL0081 | Mch | TF |
Pathway information