Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2038 ATGAACAGACATCGATGGACAGGACGATTCGAAGCTCATTTATGGGACAAAGGATCTTGGAATCCAACACAAAGGAAGAAGGGAAAGCAAGTTTATTTAGGAGCTTATGATGAAGAAGAATCAGCTGCTAGAGCATATGACTTGGCTGCACTCAAGTATTGGGGAACATCAACTTTCACTAATTTTCCGACATCTGATTATGAGGAAGAAGTTAGGATAATGAAAACTATGACAAAGGAGGAATATTTGGCCTCCTTAAGAAGGAAAAGCAGTGGTTTCTCTAGAGGTGTATCTAAGTATCGGGGTGTTGCGAGGCACCATCACAATGGGAGGTGGGAAGCAAGAATAGGAAGAGTATTTGGGAACAAGTATCTCTACCTTGGAACTTACAGCACACAAGAGGAAGCAGCAAGAGCATACGACATGGCAGCAATAGAATACAGAGGCATAAACGCAGTCACCAACTTCGAGCTCAGCAGCTACATAACATGGCTTAAACCA 501 42.71 MNRHRWTGRFEAHLWDKGSWNPTQRKKGKQVYLGAYDEEESAARAYDLAALKYWGTSTFTNFPTSDYEEEVRIMKTMTKEEYLASLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDMAAIEYRGINAVTNFELSSYITWLKP 167
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 22867643 22872794 + MC08g1571 Mch8g2038 695659
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2038 167 SMART rav1_2 99 163 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2038 167 SMART rav1_2 3 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2038 167 CDD AP2 3 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2038 167 Gene3D AP2/ERF domain 98 159 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2038 167 Gene3D AP2/ERF domain 1 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2038 167 Pfam AP2 domain 98 149 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2038 167 Pfam AP2 domain 3 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2038 167 CDD AP2 98 159 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2038 167 SUPERFAMILY DNA-binding domain 98 158 IPR016177 GO:0003677(InterPro)
Mch8g2038 167 FunFam AP2-like ethylene-responsive transcription factor 98 159 - -
Mch8g2038 167 SUPERFAMILY DNA-binding domain 3 65 IPR016177 GO:0003677(InterPro)
Mch8g2038 167 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 165 - -
Mch8g2038 167 PRINTS Ethylene responsive element binding protein signature 139 159 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2038 167 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2038 167 ProSiteProfiles AP2/ERF domain profile. 99 157 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2038 167 ProSiteProfiles AP2/ERF domain profile. 1 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1789 Mch-Chr5:18324343 Mch8g2038 Mch-Chr8:22867643 2.34E-48 dispersed
Mch8g1623 Mch-Chr8:13240220 Mch8g2038 Mch-Chr8:22867643 5.37E-103 dispersed
Mch8g2038 Mch-Chr8:22867643 Mch9g1891 Mch-Chr9:20537313 5.65E-89 dispersed
Mch8g2038 Mch-Chr8:22867643 Mch8g1031 Mch-Chr8:7280075 5.72E-71 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43890 PF00847 AP2 5.60E-10 CL0081 Mch TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2038 - - - 0.0