Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2083 ATGGCGGCCGCAGCTACGACAAGCGTTGTGCCGCCTAATCGACGGCGATCAATTAATGCGCCGGAAGATAAGTTGGAATTCGAGACGACGGAGGGGGTTGAGCCGATCTCGAGTTTCGATCAGATGGGCATTAAGGACGATCTTCTCCGTGGAATATATGCATACGGGTTCGAGAAGCCCTCGGCCATTCAGCAGAGAGCCGTGAGACCGATTATCGAGGGGCGAGATGTCATTGCTCAGGCCCAGTCTGGAACAGGCAAGACGTCCATGATTGCCCTTACCGTTTGCCAAATGGTTGATACATCGAGTAGAGAAGTACAGGCCTTGATCTTGTCCCCTACGAGAGAATTGGCAACTCAGACAGAGAAAGTAATATTGGCCATTGGCGACTACATTAATATACAAGCACACGCTTGCATTGGCGGCAAAAGTGTAGGTGAAGATATCAGGAAGCTCGAGTTTGGAGTTCAGATTGTATCAGGAACCCCTGGAAGAGTCTGTGACATGATCAAGAGAAGGACATTGCGTACCAGAGCCATTAAGTTGTTAGTTCTGGATGAGTCTGACGAGATGTTGAGCAGAGGGTTTAAAGACCAGATTTATGATGTGTATAGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATCCTGGAGATGACAAACAAGTTCATGACGGATCCTGTGAGAATACTTGTCAAGCGTGATGAGTTAACTTTGGAGGGTATTAAGCAATTCTTCGTTGCAGTTGAAAGGGAAGAGTGGAAGTTTGATACCTTATGTGATCTTTATGACACCTTGACTATCACTCAAGCTGTAATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTAACTGAGAAGATGCGTAGTAATAACTTCACAGTTTCACATATGCATGGGGACATGCCTCAGAGGGAAAGAGATGCAATCATGGGGGAGTTCCGATCAGGAACTACTCGTGTCCTAATCACCACTGATGTTTGGGCACGAGGGCTTGATGTATCACTAGTGATAAACTACGACCTTCCAAACAATCGAGAACTTTACATTCACAGGATAGGAAGATCTGGTCGGTTTGGGCGCAAGGGTGTTGCCATTAACTTTGTGAAAAGCGATGACATAAAGATCCTGAGAGATATTGAGCAGTATTACAGTACCCAGATTGATGAGATGCCCATGAACGTTGCTGATTTGATTTAA 1224 45.59 MAAAATTSVVPPNRRRSINAPEDKLEFETTEGVEPISSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTSSREVQALILSPTRELATQTEKVILAIGDYINIQAHACIGGKSVGEDIRKLEFGVQIVSGTPGRVCDMIKRRTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQRERDAIMGEFRSGTTRVLITTDVWARGLDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 23828482 23835128 + MC08g1607 Mch8g2083 695704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2083 407 Pfam Helicase conserved C-terminal domain 263 368 IPR001650 -
Mch8g2083 407 CDD SF2_C_DEAD 250 377 - -
Mch8g2083 407 FunFam Eukaryotic initiation factor 4A-III 21 241 - -
Mch8g2083 407 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
Mch8g2083 407 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 390 IPR027417 -
Mch8g2083 407 Gene3D - 246 407 IPR027417 -
Mch8g2083 407 SMART ultradead3 56 253 IPR014001 -
Mch8g2083 407 Pfam DEAD/DEAH box helicase 62 224 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Mch8g2083 407 SMART helicmild6 290 368 IPR001650 -
Mch8g2083 407 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 31 392 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER)
Mch8g2083 407 MobiDBLite consensus disorder prediction 1 22 - -
Mch8g2083 407 Gene3D - 27 245 IPR027417 -
Mch8g2083 407 CDD DEADc_EIF4AIII_DDX48 39 239 - -
Mch8g2083 407 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724(InterPro)
Mch8g2083 407 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 407 IPR001650 -
Mch8g2083 407 FunFam Eukaryotic initiation factor 4A-III 244 407 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0378 Mch-Chr5:2574357 Mch8g2083 Mch-Chr8:23828482 1.12E-87 dispersed
Mch5g1683 Mch-Chr5:17604419 Mch8g2083 Mch-Chr8:23828482 1.09E-62 dispersed
Mch8g0984 Mch-Chr8:7012121 Mch8g2083 Mch-Chr8:23828482 3.02E-172 dispersed
Mch8g2083 Mch-Chr8:23828482 Mch9g0444 Mch-Chr9:3300212 3.50E-51 dispersed
Mch8g2083 Mch-Chr8:23828482 Mch9g0240 Mch-Chr9:1818171 1.20E-171 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2083 K13025 - csv:101222664 787.719