Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2099 ATGGAGGCTGGATATGAAGGTGAAGCTTGTCAATTGTACGGCGTGGGTTCTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAGTCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTAAATACGATGGAATCTGATCATTTGAGTAGGCAACTTTTTCCAATCGTCTCTGGGATTCCCCTGACCGGAGGTTCTTCGAACAGTTCCTCGTCATGTTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATGGAAGATGAGAATCTTAATGATGAAGCACGTGCTTTGAGTTTAAAGGTCGGCGGAAATGGTTCTCAGATTGCTGAGAGAGAAGCAGGGAATTGGGAAGGAACCAGTGGGAAGAAGACTAAGTTGTCTGGTGGAAATTCGAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCTAAAGATTATCACAGACGGCATAAAGTCTGCGAAATGCATTCTAAGGCAAGTAGGGCGCTTGTCGCTAACGTCATGCAGCGATTCTGTCAGCAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAGCGAAGTTGTCGTAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGATAATGTTGTTAATGGAAATTCCCCTCCTGATGAGCAGACTAGTAGTTATTTACTAATAACTCTATTACGAATACTTGCAAATTTGCACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTGCTCATCTTATAAGAAGCCTTGCCTGTCAATCTAGCGAGCATGGGGGAAAGAACCTATCTGGGATTCTTCATGATCCCCAGAATTTGCTGAACAATGGAGCATTAATTGGTAAATCAGACCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAGGTACCTTTGAGACCTTCTAAACAACACGACACAGTACCAATATCTGAGAAACCGGTACAAGCCATTGCAAGGGGTGGAGATACACCAGCCATATCTTCTATAAAACCAAGCACTTCGAACAGCCCTCCAGCTTATTCAGAAATCAGGAACAGTACAGTTGGGCAATGCAAAATGATGAACTTTGATTTGAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGATATTGAGAGACCAGCACTCCCTGCGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGTCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCTCAGTCGCCTTCTAGCTCTGCTGGAGACGCTCAGAGCCGCACAGATCGCATAATTTTGAAATTGTTTGGGAAAGCTCCAAATGATTTTCCTCACGTTTTACGAGCTCAGGTTCTTGATTGGCTATCACACAGTCCCACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTATTCTAACGATATACTTACGTCAGACCGAGGCTGCTTGGGATGATCTTTGCCATGACCTCAGTACCAGTTTGAATAGGCTTCTTGAAGTTCCGGATGATTCTTTCTGGAGAACCGGATGGGTTTATGTTCGGGTTCAGCACCAAATAGCTTTTGTTTATCATGGTCAGGTTGTAGTTGACACGTCATTGCCACTTAGAAACAAGAATTACTGTAGAATCACAAGTATAAATCCGGTTGCCGTTTCTGCATCCAAGAAGGCAATATTTTCAGTTAAAGGAATAAACTTGACCCGACCTACGACAAGGTTACTCTGTGCAATTGAAGGGAAATATCTGACTCAGGAAGCTTCAGATGAGTCATCAGAAAGCGGTGATAACTTGAAGACGCAAGATGACAGCGAATGCGTTACTTTTTCATGCTCTATTCCTGATGTATATGGAAGGGGATTCATTGAGGTGGAAGATCATGGTTTTAGCAGCAGTTCCATTCCTTTCATAGTTGCAGAGGAGGATGTTTGTTCTGAGATCTGTACGCTTCAGACTGCATTAGAATTTACCGAAACGTGTTCAAATTCCGGGGAAGCCACAGAGATGGAAGGAAGGAGTAGCGCGATGGAGTTTATTCATGAAATTGGTTGGCTGTTTCATAGAAGTCAATTGAAGTCTAGATTAGGTCACTTGGATCCTAATGAAAATCTCTTTTCGCTGACACGGTTTAAGTGGCTCATGGAGTTCTCCATGGACCATGACTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTGTTCTCGATGGGACCGTGGATGCTGGAGAGCATGCATCCTTGAATCTTGCATTGACCGAAATGAGTCTTCTTCACCGAGCAGTGAGAAAAAACAATCGGTCACTGGTGGAACTCCTTTTGAGATACCCTTCAAGAGTAAATGATGCATCGAGTTCTGAAGACAATGCATCCGTTGATGTAGGGACTGATAGCTTCCTGTTTAGACCCGACGTCATTGGCCCGGCTGGTTTGACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGATGCATTAACTAATGACCCGGGAATGGTGGGAGTTGAGGCTTGGAAGAATGCTCGAGACAGCACGGGCTCGACCCCTGAGGATTATGCCCGTTTGCGCGGCCATTACTCGTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGGCATGTGGTGCTGGACATTCCTAGTACTCTCTCAGACGGTAGCTGGAATCAAAAACAGAACACTGATTTGACCTCCTCCAGGTTTGAGATTGGTAGAACAGACATGAAACCTACTCAGCTGCAGCATTGCAGGCTTTGTGTCAGGAAACCACTCGGTTGTGGAGCGTCGTCGTCTAGTGCGTCTCTGGTCTACAGGCCCGCAATGCTCTCGATGGTGGCCATTGCAGCTGTCTGTGTGTGCGTTGCGCTCCTATTCAAGAGCTCGCCCGAGGTCCTCTATGTCTTCCGCCCCTTCCGATGGGAACTATTAGATTACGGTACTAGT 3045 45.35 MEAGYEGEACQLYGVGSMDLRAAVGKRSLEWDLNDWKWDGDLFIARPLNTMESDHLSRQLFPIVSGIPLTGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVMEDENLNDEARALSLKVGGNGSQIAEREAGNWEGTSGKKTKLSGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCEMHSKASRALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLITLLRILANLHSNGSNQTTDQDLLAHLIRSLACQSSEHGGKNLSGILHDPQNLLNNGALIGKSDLVSTFLSNGPQVPLRPSKQHDTVPISEKPVQAIARGGDTPAISSIKPSTSNSPPAYSEIRNSTVGQCKMMNFDLNDAYVDSDDGMEDIERPALPAHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGDAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVILTIYLRQTEAAWDDLCHDLSTSLNRLLEVPDDSFWRTGWVYVRVQHQIAFVYHGQVVVDTSLPLRNKNYCRITSINPVAVSASKKAIFSVKGINLTRPTTRLLCAIEGKYLTQEASDESSESGDNLKTQDDSECVTFSCSIPDVYGRGFIEVEDHGFSSSSIPFIVAEEDVCSEICTLQTALEFTETCSNSGEATEMEGRSSAMEFIHEIGWLFHRSQLKSRLGHLDPNENLFSLTRFKWLMEFSMDHDWCAVVKKLLDVVLDGTVDAGEHASLNLALTEMSLLHRAVRKNNRSLVELLLRYPSRVNDASSSEDNASVDVGTDSFLFRPDVIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKNARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSTLSDGSWNQKQNTDLTSSRFEIGRTDMKPTQLQHCRLCVRKPLGCGASSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24026372 24033498 + MC08g1617 Mch8g2099 695720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2099 1015 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1013 IPR044817 GO:0003677(InterPro)
Mch8g2099 1015 MobiDBLite consensus disorder prediction 419 454 - -
Mch8g2099 1015 FunFam Squamosa promoter-binding-like protein 14 146 216 - -
Mch8g2099 1015 MobiDBLite consensus disorder prediction 349 373 - -
Mch8g2099 1015 SUPERFAMILY Ankyrin repeat 780 897 IPR036770 -
Mch8g2099 1015 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677(InterPro)
Mch8g2099 1015 MobiDBLite consensus disorder prediction 356 373 - -
Mch8g2099 1015 Pfam SBP domain 155 228 IPR004333 GO:0003677(InterPro)
Mch8g2099 1015 Gene3D - 146 216 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch8g2099 1015 Gene3D - 724 902 IPR036770 -
Mch8g2099 1015 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Mch8g2099 1015 SMART ANK_2a 780 809 IPR002110 GO:0005515(InterPro)
Mch8g2099 1015 SMART ANK_2a 876 905 IPR002110 GO:0005515(InterPro)
Mch8g2099 1015 SMART ANK_2a 836 866 IPR002110 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2099 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0015 Mch-Chr11:129531 Mch8g2099 Mch-Chr8:24026372 6.10E-121 dispersed
Mch4g0143 Mch-Chr4:960427 Mch8g2099 Mch-Chr8:24026372 2.76E-31 dispersed
Mch7g0067 Mch-Chr7:649973 Mch8g2099 Mch-Chr8:24026372 1.35E-30 dispersed
Mch8g1392 Mch-Chr8:10364197 Mch8g2099 Mch-Chr8:24026372 2.13E-29 dispersed
Mch8g2099 Mch-Chr8:24026372 Mch9g2377 Mch-Chr9:23647717 8.93E-26 dispersed
Mch8g2099 Mch-Chr8:24026372 Mch6g0308 Mch-Chr6:2036245 9.79E-30 transposed
Mch8g2099 Mch-Chr8:24026372 Mch3g1679 Mch-Chr3:18429392 1.25E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2099 . 179 1015 SBP-box Gene Family AT2G47070 54.8 1.7e-239 825.9
Mch8g2099 . 1 1015 SBP-box Gene Family AT3G60030 53.6 1.0e-278 956.4
Mch7g0067 . 15 163 SBP-box Gene Family AT5G50570 55.9 3.4e-41 166.0
Mch8g1392 . 46 160 SBP-box Gene Family AT5G50570 65.0 1.3e-37 154.1
Mch8g2099 . 179 1015 SBP-box Gene Family AT2G47070 54.8 1.7e-239 825.9
Mch8g2099 . 1 1015 SBP-box Gene Family AT3G60030 53.6 1.0e-278 956.4
Mch7g0067 . 15 163 SBP-box Gene Family AT5G50570 55.9 3.4e-41 166.0
Mch8g1392 . 46 160 SBP-box Gene Family AT5G50570 65.0 1.3e-37 154.1
Mch7g0067 . 15 163 SBP-box Gene Family AT5G50670 55.9 3.4e-41 166.0
Mch8g1392 . 46 160 SBP-box Gene Family AT5G50670 65.0 1.3e-37 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43891 PF03110 SBP 1.50E-29 No_clan Mch TF