Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2102 GCTTCCTCAGGCAGCCCGTGGTATGGTCCCGACCGTGTCAAGTACCTCGGACCATTCTCTGGTGAGCCTCCATCTTACCTCAAAGGGGAATTCCCTGGTGACTATGGTTGGGATACCGCAGGTCTATCGGCTGATCCCGAAACCTTTGCTAAGAACCGGGAGCTCGAAGTGATTCATAGTAGATGGGCTATGCTTGGAGCTCTAGGATGTGTATTCCCAGAGCTTCTTTCCAGAAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCACAGATCTTCAGTGAGGGTGGCCTTGACTATCTTGGAAACCCAGGTCTTGTTCATGCACAAAGCATTTTGGCCATCTGGGCATGTCAAGTAGTGTTAATGGGTGCAGTTGAGGGTTACCGTATTGCCGGAGGACCACTCGGGGAAGTTACTGATCCCATTTATCCCGGGGGTAGCTTTGATCCCCTCGGGCTGGCCGACGATCCAGAGGCATTTGCAGAGCTTAAGGTGAAAGAACTCAAGAACGGCCGACTTGCAATGTTTTCCATGTTCGGGTTTTTCGTGCAGGCCATTGTAACAGGAAAAGGTCCTTTGGAGAACCTCGCAGATCATCTTGCTGACCCTGTCAACAACAAT 633 50.87 ASSGSPWYGPDRVKYLGPFSGEPPSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPGLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24052749 24053381 + MC08g1620 Mch8g2102 695723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2102 211 Pfam Chlorophyll A-B binding protein 23 190 IPR022796 -
Mch8g2102 211 FunFam Chlorophyll a-b binding protein, chloroplastic 14 211 - -
Mch8g2102 211 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 211 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
Mch8g2102 211 SUPERFAMILY Chlorophyll a-b binding protein 6 211 - -
Mch8g2102 211 Gene3D Chlorophyll a/b binding protein domain 14 211 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1005 Mch-Chr3:13779783 Mch8g2102 Mch-Chr8:24052749 9.10E-153 dispersed
Mch3g1006 Mch-Chr3:13782717 Mch8g2102 Mch-Chr8:24052749 9.10E-153 dispersed
Mch4g0334 Mch-Chr4:2087671 Mch8g2102 Mch-Chr8:24052749 1.41E-139 dispersed
Mch8g2102 Mch-Chr8:24052749 Mch9g2370 Mch-Chr9:23612786 3.80E-37 dispersed
Mch8g2102 Mch-Chr8:24052749 Mch3g1003 Mch-Chr3:13775686 7.15E-153 transposed
Mch8g2102 Mch-Chr8:24052749 Mch1g2002 Mch-Chr1:19602157 2.77E-152 transposed
Mch8g2102 Mch-Chr8:24052749 Mch2g0724 Mch-Chr2:4940071 6.66E-153 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2102 K08912 - csv:101222687 434.876