Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2124 ATGGAGAAGATGAAGGAAGAGCTTATAAAGATGGAGGATACAAGCACCAGCGGCGGCGGCGGCGGCGGTGGAGGTTTCCCATTTTCCGATCACAGTTTGTTGGATTTCTCCGACGCCCAAAAATGCCCTCTGGGTTTCATGGAGCTTCTTGGTCTCGATTATCACGCCGACTACTCGGAAGTCCTGAATCCGCCGGCGACGCCCAACTCCTCCTCCGTCTCCTCCGCCTCCAGTGACGCCGCCGCCGCCGCCGCCGACCAAGATGACCCACCTCACCAAAATCCCTCAAAACAATTGAAGGTGAGTAAGAAGAAGAAGGAGAAGAGAGAGAAAGAGGCAAGATTTGCGTTCATGACGAAGAGTGAAGTTGATCATCTTGAAGATGGGTATCGATGGAGAAAGTATGGCCAAAAAGCTGTCAAAAACAGCCCTTTTCCTAGGAGCTATTATCGTTGCACCAGTGCAGCCTGCAATGTAAAGAAAAGAGTCGAACGATCCTTCGCGGATCCAACCATTGTGGTGACCACCTACGAAGGCCAACACACCCACCCGAGCCCGGTCCTCACGCGCTCCGCCCTCGCTGCTGCCATTCCTCCACACTCCGCCATCGCGTCGGGACAAGGGTGCGCTGGCATTGCTACCATGCCATTGCTCAAAGCTAGCAACAACACTAATGAAGATAACATCCCGACAATGTCATATTTTCAAAATCCCGCCTTCTTCACCACCCAACACATGACTGTCGATCACAACCGCAACTTCACCGCTGCAGCTGCAAACCCCGCCGGAATCCTACCGGAGAGACGATTCTGCAACTCAAAAAATACTGCTTTTCTTGCAGACCATGGGCTGCTTCAAGATGTTGTTCCTCCCCACATGCTGCAACAAGAGTAA 894 52.57 MEKMKEELIKMEDTSTSGGGGGGGGFPFSDHSLLDFSDAQKCPLGFMELLGLDYHADYSEVLNPPATPNSSSVSSASSDAAAAAADQDDPPHQNPSKQLKVSKKKKEKREKEARFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSAACNVKKRVERSFADPTIVVTTYEGQHTHPSPVLTRSALAAAIPPHSAIASGQGCAGIATMPLLKASNNTNEDNIPTMSYFQNPAFFTTQHMTVDHNRNFTAAAANPAGILPERRFCNSKNTAFLADHGLLQDVVPPHMLQQE 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24315307 24318240 - MC08g1640 Mch8g2124 695745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2124 297 FunFam WRKY transcription factor 57 112 186 - -
Mch8g2124 297 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 71 221 IPR044810 GO:0003700(InterPro)
Mch8g2124 297 SMART WRKY_cls 126 185 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g2124 297 ProSiteProfiles WRKY domain profile. 121 186 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g2124 297 Gene3D WRKY domain 111 187 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g2124 297 Pfam WRKY DNA -binding domain 127 184 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch8g2124 297 MobiDBLite consensus disorder prediction 63 81 - -
Mch8g2124 297 MobiDBLite consensus disorder prediction 63 107 - -
Mch8g2124 297 MobiDBLite consensus disorder prediction 1 30 - -
Mch8g2124 297 SUPERFAMILY WRKY DNA-binding domain 118 186 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0053 Mch-Chr4:387618 Mch8g2124 Mch-Chr8:24315307 5.07E-40 dispersed
Mch8g0554 Mch-Chr8:3987029 Mch8g2124 Mch-Chr8:24315307 3.16E-29 dispersed
Mch8g2124 Mch-Chr8:24315307 Mch9g2095 Mch-Chr9:21929943 6.11E-26 dispersed
Mch7g1247 Mch-Chr7:15992564 Mch8g2124 Mch-Chr8:24315307 2.89E-46 wgd
Mch8g2124 Mch-Chr8:24315307 Mch9g0642 Mch-Chr9:4818780 4.95E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43893 PF03106 WRKY 1.80E-26 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2124 - - - 0.0