Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2240 ATGGATTTTGTGATGGAAGGTCGTGGGGGTAATGGCGCTGGCTCAGGTGATGAACAAGAAGCTTCTAACGATCGCAAGGGGAAAAAGTCTTACCATCGCCATACCCCTTACCAGATTCAGCAACTGGAATCATTTTTCAGGGAATGCCCGCACCCTGATGAAAACCAGCGGCGGCAGCTGAGTCGAGAGCTTGGTCTTGAGACCAAACAGATAAAATTCTGGTTTCAAAATAAGAGGACTCAGACAAAGGCACAGAACGAGCGGGCGGACAACTCTGTGCTTCGGACAGAGAATGAAAAGATTCAATGTGAAAATCTTGCAATTAGAGAAGCATTGAGGAATGTTATCTGTCCATCCTGTGGAGGTCCACCTTTTGGAGAAGAAGAACGGCAGCGGAATCTCCAAAAACTGCGTCTTGAAAATTCTCACTTAAAAGAAGAGGCTATGTCTAACCTTCTTGCCAAGTACATTGGGAAACCAATATCACAACTTGAATCACTATTGCCGGTTCTTGGATCTTCGCTAGATTTATCACCAAGAAGCTCCCTTAACCAACGAGTTGGAAGTCCTGCAGTTGATCTTATTCCTGATCCTGTAATATTAAATGGAACAGCAACACCCTACCAATCAAGAGGTATTAACGATTTGGAAAATGCACTTATGTTGGAAACTGCTACAACTGCCTTAGAAGAGCTGATCAGACTTTTGAGGATTGATGAGCCTTTGTGGACGAAGACCCCTAATGATGGAAGGTATATTCTCCATCGTGACAGCTATGACAAAATATTTCCTAGACCCAATCACTTCAAAGCAACTAGTGCTCGGACCGAATCATCGAAAAATTCAGGAGTGGTGACAATGAGCGCAATGCAATTGGTTGACAGTTTTTTAGATGCGGATAAATGGGCAGATCTTTTTCCAACTGTCATTATAAATGCGGAGACACTTCATATTATTGACCCCGGGATGCCTGGAAATCGCAGTGGCACGTTACAGTTGATGTATGAACAAATGCACGTCTTTTCACCCCTCGTGTCGCCCCGGGATTTCTGCTTCCTTCGACATTGTCAGCAGATTGAGCTTGGTGTCTGGGTAATAGTGGATGTTTCCTATGAAATCTTGAAGGATTGCATCACCTCCGCCCGCTGCTGGAGGCTTCCTTCTGGGTGCATGATTCAAGAAATGCCCAATGGGTGCTCCAAGCTTACCTGGGTTGAGCATGTGGAAGTGGATGATAAAACACAGACCCACCGGCTCTATCGAGATGTTGTGTTCAATACCACAGCGTATGGAGCCGAACGATGGGTTTTCACTCTCCAAAGGATGTGTGAGAGATTGGCTTACACATTCAGGGATTCTGTACCTGGCCATGAACTTGAAGGAGTGTTTACTTCTCTTGAAGGCAGGAGGAGCATCATGAAGCTGTCACATAGGATGGTTAAAAATTTCTGTGGTGTACTGAGCATGTCAGGTAAATTAGATTTCCCGCAATTATCCGAAGTGAACAATAGCGGCGTTCGAATCTCTGTTCGGATTAGCACGGAACTGGGGCAGCCCAGTGGCACCATTGTTAGTGCCGCAACTTCTCTTTGGCTTCCCTTACAACCCGAAAGCATCTTTAACTTCTTCAGGGATGAAAAGGCCAGAGTTCAGTGGGATGTTCTCTCAAATGGAAACCCAGTTCATGAAATTGCACACATCTTAACTGGAGTTCATCCGGGAAACTCGATATCGATAATTCGGCCATTTGTCCCGACCGAGAACAACATGCTGATTCTTCAAGAGAGCTGCACAGATCCGCTAGGATCATTGGTGATATATGCGCCCGTCGACATGCCTGCAATGAACGTTGCAGTAAGCGGTCAGGACTCATCCGAGATACCGATACTTCCATCAGGGTTTGTAATCTCAGGGGACGGCCGAGCTCACTTGGGAGGTGGAGCTTCGACCAGTGCAACCTTGGGGAGGCCGAGCGGGTCGCTGTTAACCGTAGCGTTTCAGATATTGGTGTCCAGTGTATCATCTTCAAGACAGCTGAATGTGGAGTCTGTGGCAACGGTGAATACTCTTATTAGTGCCACAGTTCAGAGGATAAAGGCTGCATTGAATTGCTCTGGCTTGGATTGA 2127 46.31 MDFVMEGRGGNGAGSGDEQEASNDRKGKKSYHRHTPYQIQQLESFFRECPHPDENQRRQLSRELGLETKQIKFWFQNKRTQTKAQNERADNSVLRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENSHLKEEAMSNLLAKYIGKPISQLESLLPVLGSSLDLSPRSSLNQRVGSPAVDLIPDPVILNGTATPYQSRGINDLENALMLETATTALEELIRLLRIDEPLWTKTPNDGRYILHRDSYDKIFPRPNHFKATSARTESSKNSGVVTMSAMQLVDSFLDADKWADLFPTVIINAETLHIIDPGMPGNRSGTLQLMYEQMHVFSPLVSPRDFCFLRHCQQIELGVWVIVDVSYEILKDCITSARCWRLPSGCMIQEMPNGCSKLTWVEHVEVDDKTQTHRLYRDVVFNTTAYGAERWVFTLQRMCERLAYTFRDSVPGHELEGVFTSLEGRRSIMKLSHRMVKNFCGVLSMSGKLDFPQLSEVNNSGVRISVRISTELGQPSGTIVSAATSLWLPLQPESIFNFFRDEKARVQWDVLSNGNPVHEIAHILTGVHPGNSISIIRPFVPTENNMLILQESCTDPLGSLVIYAPVDMPAMNVAVSGQDSSEIPILPSGFVISGDGRAHLGGGASTSATLGRPSGSLLTVAFQILVSSVSSSRQLNVESVATVNTLISATVQRIKAALNCSGLD 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25551823 25556666 + MC08g1747 Mch8g2240 695861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2240 708 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 705 IPR042160 -
Mch8g2240 708 MobiDBLite consensus disorder prediction 1 33 - -
Mch8g2240 708 SUPERFAMILY Homeodomain-like 16 86 IPR009057 -
Mch8g2240 708 Coils Coil 127 147 - -
Mch8g2240 708 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677(InterPro)
Mch8g2240 708 SUPERFAMILY Bet v1-like 501 699 - -
Mch8g2240 708 CDD START_ArGLABRA2_like 219 444 - -
Mch8g2240 708 Pfam START domain 225 445 IPR002913 GO:0008289(InterPro)
Mch8g2240 708 Pfam Homeodomain 28 83 IPR001356 GO:0003677(InterPro)
Mch8g2240 708 SMART HOX_1 27 89 IPR001356 GO:0003677(InterPro)
Mch8g2240 708 ProSiteProfiles START domain profile. 214 448 IPR002913 GO:0008289(InterPro)
Mch8g2240 708 Gene3D - 222 427 IPR023393 -
Mch8g2240 708 CDD homeodomain 28 86 IPR001356 GO:0003677(InterPro)
Mch8g2240 708 SUPERFAMILY Bet v1-like 216 447 - -
Mch8g2240 708 SMART START_1 223 445 IPR002913 GO:0008289(InterPro)
Mch8g2240 708 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch8g2240 708 FunFam Homeobox-leucine zipper protein HDG1 15 101 - -
Mch8g2240 708 Gene3D - 14 101 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1788 Mch-Chr3:19077146 Mch8g2240 Mch-Chr8:25551823 4.74E-252 dispersed
Mch7g0709 Mch-Chr7:11725418 Mch8g2240 Mch-Chr8:25551823 1.57E-182 dispersed
Mch8g1180 Mch-Chr8:8383741 Mch8g2240 Mch-Chr8:25551823 7.06E-126 dispersed
Mch8g2240 Mch-Chr8:25551823 Mch9g0333 Mch-Chr9:2507278 2.41E-119 dispersed
Mch8g2240 Mch-Chr8:25551823 Mch4g0233 Mch-Chr4:1496817 2.01E-190 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43903 PF01852 START 2.90E-36 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2240 K09338 - csv:101205899 1268.06