Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2271 ATGGCGTCGAAGATCGATGGAGTCGAAGAGGATAAAATCTCACGGCTGGAAGAAGGTACGATCGCCGTCCGCGTCGCCCGTCTCTGTCCCGCATCTATCGTCGCATGCATCCAAAAGTTTATGGCGGAGGTGATCGGAACTTACTTCGTGATCTTCGCCGGATGCGGATCGGTGGCGGTGAACAAGATCTACGGAGGATCGGTGACTTTTCCGGGAATATGTGTGGTTTGGGGATTGATTGTTATGGTTATGATTTACACAGTGGGACACATCTCTGGAGCGCACTTCAACCCCTCAGTTACCATCACACTCGCCATTTTTCGTGGCTTCCCCTGGTGGCAGGTTCCAATTTACATAGTAGCTCAAGTATCAGGGTCACTTCTTGCAAGCTGCACATTGGATCTAGTGTTTGATGTGACCGTTGAAGCATTCTACGGGACTGTGCCTGCTGGATCTAATGTTCAGTCGTTTGTTCTTGAAATCATCATCACCTTCCTCTTGCTGTTTGTTGTTTTTGCCACCTCCAATAACACCGGTGTAGGAGAATTGGGTGGAGTTATTGTTGGCATGACCATTCTCTTAAACGTTTTTGTTGCCGGGCCGATTTCTGGAGCGTCAATGAATCCAGCGAGGACCCTTGGACCCGCGATAGTGAGGCATGAATTCAGAGGACTATGGGCTTACATTGCGGGGCCGTTGATCGGAGCACTCGCCGGAGGATTCGTATTTGACCTAGTGAAGCCAAGGGAGCTGACCAGAAGCAGCTCCTGCCTCACCGGCAGCCGGAAAACG 792 50.88 MASKIDGVEEDKISRLEEGTIAVRVARLCPASIVACIQKFMAEVIGTYFVIFAGCGSVAVNKIYGGSVTFPGICVVWGLIVMVMIYTVGHISGAHFNPSVTITLAIFRGFPWWQVPIYIVAQVSGSLLASCTLDLVFDVTVEAFYGTVPAGSNVQSFVLEIIITFLLLFVVFATSNNTGVGELGGVIVGMTILLNVFVAGPISGASMNPARTLGPAIVRHEFRGLWAYIAGPLIGALAGGFVFDLVKPRELTRSSSCLTGSRKT 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 25844295 25847342 - MC08g1775 Mch8g2271 695892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2271 264 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Mch8g2271 264 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g2271 264 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g2271 264 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g2271 264 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g2271 264 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g2271 264 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g2271 264 NCBIfam MIP family channel protein 42 243 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g2271 264 Gene3D Glycerol uptake facilitator protein. 7 255 IPR023271 -
Mch8g2271 264 SUPERFAMILY Aquaporin-like 35 251 IPR023271 -
Mch8g2271 264 Pfam Major intrinsic protein 34 243 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g2271 264 PANTHER AQUAPORIN NIP2-1 34 249 IPR034294 -
Mch8g2271 264 CDD MIP 38 246 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1967 Mch-Chr1:19361161 Mch8g2271 Mch-Chr8:25844295 4.60E-89 dispersed
Mch1g1968 Mch-Chr1:19364976 Mch8g2271 Mch-Chr8:25844295 5.01E-83 dispersed
Mch7g0541 Mch-Chr7:9331309 Mch8g2271 Mch-Chr8:25844295 4.73E-07 dispersed
Mch8g1676 Mch-Chr8:14723573 Mch8g2271 Mch-Chr8:25844295 5.70E-54 dispersed
Mch8g2271 Mch-Chr8:25844295 Mch9g1489 Mch-Chr9:17287242 2.59E-16 dispersed
Mch8g2271 Mch-Chr8:25844295 Mch5g1710 Mch-Chr5:17824641 1.34E-31 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2271 K09874 - csv:101215315 384.03