Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2291 ATGATCTTGTCATGGAGGAAGAACAAGCTAGGGCTTCTTTCTAAGTTGAAGAAAGAGGTTCCGGGCGTCGATTCGGGTGCGGAGATTGAAATTCCTTCGCATTTTTTGTGTCCGATTTCCCTCGATTTGATGAAGGACCCTGTGATTTTGTGCACCGGGATTACTTACGACAGAGAGAGCATCGAGAAGTGGATTGATGCTGGGAATTTTTTATGCCCGGTGACGAAACAGGGTTTGACGGGTTTCGACCTAATCCCTAATCACGCGTTGCGGCGGATGATCCAAGATTGGTGCGTCGCGAATCGTTCTTACGGAATTGAGCGGATTCCGACGCCGCGGATTCCAGTCACTCCGTATGAAGTTTCGGAGATTTGTTCGAGAATCGCGGCCGCGACTCAAAGGACCGATTCGAAGAGGTGCGGGGAATTGGTGGGTAAGATTAGGAATTGGGGAAGAGAGAGCGAGAGGAATCGGAGGTGTATCGTGAGTGGAGGAACCGGCAACGTTTTAGCAGCTTCGTTTGAGCATTTTGCCGGTGTTTCGATTGAGAAACATGCGGGTTTGTTGGAGGAGATTTTGTTGGTTTTGGTGTGGATGTTCCCAATCGCCATGGAAGGCCTATCTAAGCTCGGATCTGCAGATTCTTTGAAATGCTTAGTCTCCTTCTTAGTGGGCAAAGATCTTTCCCCCAAGAAGAGCGCAGTTTTTGTTCTGAAAGAGTTGCTTTTGGTTGATCAAAGATTCGTCGATTCATTGGCCGCCATTGAAGGAGTACCTGAAGCTTTAGTCAGCATCGTCAAGGAGCCTCTTTGCTCATCAGCTACAAGATCATCTCTCACAGCCATTTTCTACATGATTTTGCCATCAGAAATCAGCGAGAAAATGGCATTGAAATTTATGGAACTGGGCTTGGTCTCTCTGCTACTAGAATTTCTGGTAGATGCAGAGAAAAGTCTATGCGAGAAAGCTTTGGGAATTCTGGATGGAATTTGTGATTTCAAACAAGGAAGAGAGAAGCTTTACCAGAATGCACTTACCATTCCACTATTGGTGAAGAAGATCCTGAGAGTTTCAGAGTTATCCACTGAATTCTGTCTGTCAATATTGTTGAAGCTCTGTAAAAGTGGAGAGCGGGATGAGGACGATGTGAGGGTGGAAGCAGCCCAATTGGGTGCTTTCCAGAAGATTTTGGTTCTTTTACAGGTTGGCTGTGGTGGTGCCATGAAAGACAAGGTAACTGAGCTCTTGAAGTTGTTGAATCTGTACAAAGATAGAGTAGATTGTATTGATTCGTCCATGCATTTCAAGTACTTGAAGAAATCATTC 1326 45.63 MILSWRKNKLGLLSKLKKEVPGVDSGAEIEIPSHFLCPISLDLMKDPVILCTGITYDRESIEKWIDAGNFLCPVTKQGLTGFDLIPNHALRRMIQDWCVANRSYGIERIPTPRIPVTPYEVSEICSRIAAATQRTDSKRCGELVGKIRNWGRESERNRRCIVSGGTGNVLAASFEHFAGVSIEKHAGLLEEILLVLVWMFPIAMEGLSKLGSADSLKCLVSFLVGKDLSPKKSAVFVLKELLLVDQRFVDSLAAIEGVPEALVSIVKEPLCSSATRSSLTAIFYMILPSEISEKMALKFMELGLVSLLLEFLVDAEKSLCEKALGILDGICDFKQGREKLYQNALTIPLLVKKILRVSELSTEFCLSILLKLCKSGERDEDDVRVEAAQLGAFQKILVLLQVGCGGAMKDKVTELLKLLNLYKDRVDCIDSSMHFKYLKKSF 442
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 26030881 26032206 + MC08g1793 Mch8g2291 695912
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2291 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch8g2291 442 SUPERFAMILY ARM repeat 208 419 IPR016024 -
Mch8g2291 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 108 IPR013083 -
Mch8g2291 442 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Mch8g2291 442 SUPERFAMILY RING/U-box 25 107 - -
Mch8g2291 442 SMART Ubox_2 34 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch8g2291 442 CDD RING-Ubox_PUB 32 84 IPR045210 -
Mch8g2291 442 Gene3D - 124 417 IPR011989 -
Mch8g2291 442 PANTHER WDSAM1 PROTEIN 28 430 IPR045185 GO:0061630(InterPro)
Mch8g2291 442 Pfam U-box domain 31 102 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2247 Mch-Chr6:24667659 Mch8g2291 Mch-Chr8:26030881 9.54E-10 dispersed
Mch8g0620 Mch-Chr8:4451264 Mch8g2291 Mch-Chr8:26030881 3.13E-23 dispersed
Mch8g2291 Mch-Chr8:26030881 Mch9g1350 Mch-Chr9:15825539 2.93E-150 dispersed
Mch8g2291 Mch-Chr8:26030881 Mch2g0219 Mch-Chr2:1679765 8.27E-52 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2291 - - - 0.0