Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2297 CTTTCCGGGGAACTTCCGGTGGGGCTTGGGAATCTGACGCGGCTACAGACTCTGTCTCTGCGATTTAATGCTCTGTCCGGCGGAATTCCGGCGGATTTTAAGAATCTCCGGGCGCTGCGTAATCTCTACTTGCAGGGGAACTCGTTTTCCGGCGAGATTCCGGGGTTTTTGTTCGATTTTCAGAATCTGGTCCGGTTGAATATGGCGGACAACAATTTTTCAGGGGAGATTTCATCTGGGTTTAATAATCTGACCCGTTTGGCTACTCTGTATTTGCAGAACAATCAGCTCACCGGAGCGATTCCCGATTTGAATCTTCCTCTTGGCCAATTCAATGCCTCGTTTAATCGATTGAATGGGTCGATCCCTTTGAAGCTCTCTGGTTTTCCGGCGAGTGCTTTTGAAGGAAACTCCCTATGTGGGGCGCCATTGTTGCTCTGCAACTCGAACTCCACCGAGCCCGAACCGACCGGGAGTAGGAAGAAGAAGCTCTCCGGTGGGGCGATCGCCGGAATTGTGATTGGTAGTTTCTTTATTTTGGTGCTGATTTTGGTTATGTTGATCCTTTTGTGTCAAAGGAAAGATCATTTGACTGCGGCAAAATCCGCGGGGAAGGGCGGCGAGAAGGAGAAGAGATTGGTGTTCTTTGGCAATGTGGGGAATGTGTTTGATTTAGAGGATCTGTTGAGGGCATCCGCGGAGGTTCTCGGTAAGGGGACGTTCGGGACGGCGTATAAGGCGACGTTGGAGACGGGGATGGTCGTCGCCGTGAAGCGGCTGAAGGAGATGACGGCGGCAGAGAAGGAGTTCAGGGAGAAGATGGAGGAGGTGGGTAAGATGAAGCATGAGAATTTGGTGCCTCTTAGAGCTTATTATTACAGTAGAGAAGAGAAGCTTTTGGTTTATGATTACATGCCAATGGGAAGCTTGTCTGCACTTTTACATGGTAGTAGAGAGTCGGGAAGAACTCCATTGAATTGGGAAGCAAGGTCGGGCATAGCCCTCGGAGTCGCCCGTGGGATTCATTACCTTCATTCTCAAGGCCCCGCCATCTCCCACGGCAACATCAAGTCCTCCAACATTCTCCTCACTCGATCCTACGAAGCCCGTGTCTCAGACTTTGGCCTCGCACAGCTAGCAATCTCCCCCTCAGCACCAACCCGTGTCGCCGGGTACCGAGCCCCCGAGGTGACCGATTCCCGAAAGGTCTCGCAGAAGGCCGACGTGTACAGCTTCGGAGTGTTGTTATTGGAGGTGCTAACAGGAAAAGCCCCCACACATTCCATCTTGAATGAGGAAGGTGTGGACCTTCCTAGATGGGTTCAGTCTGTGGTTCAAGAGGAATGGACAGCTGAAGTGTTTGATGAAGAACTTCTTAGGTACCAAAATGTTGAGGAGGAGATGGTTCAACTCCTGGAACTCGCTCTCCAATGCTCGGTCCCGTATCCCGACAACCGCCCGGGAATGGCCGAGGTCGCCCGACGAATCGAGGAACTCTGTCGATCGACCTCACAAAAACAGAGTGAGGGAATTGACAACGATGGAAACAATGGCATTTCCACACAGTTTCATTCAGTAAGCTCAGGTGATCCACCATCTGCAGGGTAG 1608 51.55 LSGELPVGLGNLTRLQTLSLRFNALSGGIPADFKNLRALRNLYLQGNSFSGEIPGFLFDFQNLVRLNMADNNFSGEISSGFNNLTRLATLYLQNNQLTGAIPDLNLPLGQFNASFNRLNGSIPLKLSGFPASAFEGNSLCGAPLLLCNSNSTEPEPTGSRKKKLSGGAIAGIVIGSFFILVLILVMLILLCQRKDHLTAAKSAGKGGEKEKRLVFFGNVGNVFDLEDLLRASAEVLGKGTFGTAYKATLETGMVVAVKRLKEMTAAEKEFREKMEEVGKMKHENLVPLRAYYYSREEKLLVYDYMPMGSLSALLHGSRESGRTPLNWEARSGIALGVARGIHYLHSQGPAISHGNIKSSNILLTRSYEARVSDFGLAQLAISPSAPTRVAGYRAPEVTDSRKVSQKADVYSFGVLLLEVLTGKAPTHSILNEEGVDLPRWVQSVVQEEWTAEVFDEELLRYQNVEEEMVQLLELALQCSVPYPDNRPGMAEVARRIEELCRSTSQKQSEGIDNDGNNGISTQFHSVSSGDPPSAG 535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26130326 26133512 + MC08g1799 Mch8g2297 695918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2297 535 FunFam pollen receptor-like kinase 1 199 304 - -
Mch8g2297 535 Pfam Protein kinase domain 234 492 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2297 535 Gene3D Phosphorylase Kinase; domain 1 199 304 - -
Mch8g2297 535 ProSiteProfiles Protein kinase domain profile. 230 499 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2297 535 CDD STKc_IRAK 236 499 - -
Mch8g2297 535 Pfam Leucine Rich Repeat 62 84 IPR001611 GO:0005515(InterPro)
Mch8g2297 535 Pfam Leucine Rich Repeat 39 58 IPR001611 GO:0005515(InterPro)
Mch8g2297 535 Pfam Leucine Rich Repeat 14 36 IPR001611 GO:0005515(InterPro)
Mch8g2297 535 FunFam Probable inactive receptor kinase At1g48480 305 507 - -
Mch8g2297 535 Gene3D Ribonuclease Inhibitor 1 155 IPR032675 -
Mch8g2297 535 MobiDBLite consensus disorder prediction 503 535 - -
Mch8g2297 535 Coils Coil 263 283 - -
Mch8g2297 535 SUPERFAMILY Protein kinase-like (PK-like) 234 496 IPR011009 -
Mch8g2297 535 Gene3D Transferase(Phosphotransferase) domain 1 305 522 - -
Mch8g2297 535 FunFam Piriformospora indica-insensitive protein 2 5 103 - -
Mch8g2297 535 SUPERFAMILY L domain-like 1 129 - -
Mch8g2297 535 ProSitePatterns Protein kinases ATP-binding region signature. 236 258 IPR017441 GO:0005524(InterPro)
Mch8g2297 535 PANTHER OS05G0588300 PROTEIN 1 504 IPR050994 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1251 Mch-Chr11:8895496 Mch8g2297 Mch-Chr8:26130326 1.01E-56 dispersed
Mch3g1803 Mch-Chr3:19272850 Mch8g2297 Mch-Chr8:26130326 3.08E-159 dispersed
Mch4g1668 Mch-Chr4:19878595 Mch8g2297 Mch-Chr8:26130326 1.13E-152 dispersed
Mch6g0451 Mch-Chr6:3004373 Mch8g2297 Mch-Chr8:26130326 2.31E-74 dispersed
Mch6g0772 Mch-Chr6:5336821 Mch8g2297 Mch-Chr8:26130326 1.87E-120 dispersed
Mch8g2297 Mch-Chr8:26130326 Mch8g3115 Mch-Chr8:33507000 6.99E-128 dispersed
Mch8g2297 Mch-Chr8:26130326 Mch3g1575 Mch-Chr3:17751555 3.11E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77624 PF00069 Pkinase 4.50E-40 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2297 - - - 0.0