Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2352 ATGATTACAAATTCAAGAGAAGAGGATAATTCGCCTTCAAAACTGGAAGCTGATCATACTGGAAAAGTTAGCAAATGCAAATCATCAGCTGAAGCTGCAGCTTCATCAAGTTCATCTCCATGGCTTAGGTTGAAAGATCCGAGAATTGTGCGCGTTTCCCGAGCTTTCGGAGGCAAAGATCGACACAGCAAAGTTTGCACCATAAGAGGGCTACGCGACAGGCGCGTAAGGCTTTCGGTTTCCACTGCAATTCAGTTATATGATCTTCAGGATCGGCTCGGCCTCAACCAGCCGAGCAAGGTCGTCGACTGGTTGCTCAATGCCGCTAAGGATGAGATTGATGAACTTCCTCCATTGCCAATCCCATCTGGAACCACCCTCGGCCTCAACTTCCAATCCATGTTAGCTCATACCAACTCGTATGGATCGGAATTCAAAATTAACCCTCGCGACGAGGGCGAAGAAGAAAGGCAACACAAAAACGATACACCCAATTCGTCTCACCCTCCTTCATTCTCTGCTCTATTAAACAACGTCGTTGCGAACGGCAATGCCCCATTCGGGTATCACTGGGAGCCATCAAATCTTCCATTCTTGTCGTCGTCGTCTCACCACCCTACGGGAAGCCATGGATTCTTTACGTCTCAGGCCGCGGCGGCCGAAGATCTCCATAACTTCAATGTATTGTCCTTGCCACGCCCATTGCCTAATTTGTCTCTCTCAACAGGTTCTCAAAATTTCTTGCTTCACAATAATTGTCTTACATCTCCCTTGAACTCAATAAACCAACCACCCAATAATGTTAGGCCCTTTCATTTCAGTATGGCTCCCAAATTTGTTTCTCAAGAAAAGAATAATGGAGATCAACCAAATAAGGATGATGAGTTTGCTTCTGATGAA 900 46.0 MITNSREEDNSPSKLEADHTGKVSKCKSSAEAAASSSSSPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSGTTLGLNFQSMLAHTNSYGSEFKINPRDEGEEERQHKNDTPNSSHPPSFSALLNNVVANGNAPFGYHWEPSNLPFLSSSSHHPTGSHGFFTSQAAAAEDLHNFNVLSLPRPLPNLSLSTGSQNFLLHNNCLTSPLNSINQPPNNVRPFHFSMAPKFVSQEKNNGDQPNKDDEFASDE 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26685311 26686309 + MC08g1841 Mch8g2352 695973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2352 300 MobiDBLite consensus disorder prediction 1 37 - -
Mch8g2352 300 Pfam TCP family transcription factor 58 153 IPR017887 -
Mch8g2352 300 MobiDBLite consensus disorder prediction 9 25 - -
Mch8g2352 300 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
Mch8g2352 300 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 245 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Mch8g2352 300 MobiDBLite consensus disorder prediction 143 174 - -
Mch8g2352 300 MobiDBLite consensus disorder prediction 147 163 - -
Mch8g2352 300 MobiDBLite consensus disorder prediction 281 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2046 Mch-Chr1:19888206 Mch8g2352 Mch-Chr8:26685311 5.51E-27 dispersed
Mch3g0979 Mch-Chr3:13593601 Mch8g2352 Mch-Chr8:26685311 5.76E-27 dispersed
Mch4g0104 Mch-Chr4:687986 Mch8g2352 Mch-Chr8:26685311 1.75E-19 dispersed
Mch8g2352 Mch-Chr8:26685311 Mch9g1994 Mch-Chr9:21273676 3.91E-13 dispersed
Mch3g1687 Mch-Chr3:18494573 Mch8g2352 Mch-Chr8:26685311 2.67E-35 wgd
Mch6g0299 Mch-Chr6:1971851 Mch8g2352 Mch-Chr8:26685311 1.20E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43911 PF03634 TCP 3.10E-28 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2352 - - - 0.0