Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2352 ATGATTACAAATTCAAGAGAAGAGGATAATTCGCCTTCAAAACTGGAAGCTGATCATACTGGAAAAGTTAGCAAATGCAAATCATCAGCTGAAGCTGCAGCTTCATCAAGTTCATCTCCATGGCTTAGGTTGAAAGATCCGAGAATTGTGCGCGTTTCCCGAGCTTTCGGAGGCAAAGATCGACACAGCAAAGTTTGCACCATAAGAGGGCTACGCGACAGGCGCGTAAGGCTTTCGGTTTCCACTGCAATTCAGTTATATGATCTTCAGGATCGGCTCGGCCTCAACCAGCCGAGCAAGGTCGTCGACTGGTTGCTCAATGCCGCTAAGGATGAGATTGATGAACTTCCTCCATTGCCAATCCCATCTGGAACCACCCTCGGCCTCAACTTCCAATCCATGTTAGCTCATACCAACTCGTATGGATCGGAATTCAAAATTAACCCTCGCGACGAGGGCGAAGAAGAAAGGCAACACAAAAACGATACACCCAATTCGTCTCACCCTCCTTCATTCTCTGCTCTATTAAACAACGTCGTTGCGAACGGCAATGCCCCATTCGGGTATCACTGGGAGCCATCAAATCTTCCATTCTTGTCGTCGTCGTCTCACCACCCTACGGGAAGCCATGGATTCTTTACGTCTCAGGCCGCGGCGGCCGAAGATCTCCATAACTTCAATGTATTGTCCTTGCCACGCCCATTGCCTAATTTGTCTCTCTCAACAGGTTCTCAAAATTTCTTGCTTCACAATAATTGTCTTACATCTCCCTTGAACTCAATAAACCAACCACCCAATAATGTTAGGCCCTTTCATTTCAGTATGGCTCCCAAATTTGTTTCTCAAGAAAAGAATAATGGAGATCAACCAAATAAGGATGATGAGTTTGCTTCTGATGAA 900 46.0 MITNSREEDNSPSKLEADHTGKVSKCKSSAEAAASSSSSPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSGTTLGLNFQSMLAHTNSYGSEFKINPRDEGEEERQHKNDTPNSSHPPSFSALLNNVVANGNAPFGYHWEPSNLPFLSSSSHHPTGSHGFFTSQAAAAEDLHNFNVLSLPRPLPNLSLSTGSQNFLLHNNCLTSPLNSINQPPNNVRPFHFSMAPKFVSQEKNNGDQPNKDDEFASDE 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26685311 26686309 + MC08g1841 Mch8g2352 695973

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2352 300 MobiDBLite consensus disorder prediction 1 37 - -
Mch8g2352 300 Pfam TCP family transcription factor 58 153 IPR017887 -
Mch8g2352 300 MobiDBLite consensus disorder prediction 9 25 - -
Mch8g2352 300 ProSiteProfiles TCP domain profile. 58 116 IPR017887 -
Mch8g2352 300 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 245 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Mch8g2352 300 MobiDBLite consensus disorder prediction 143 174 - -
Mch8g2352 300 MobiDBLite consensus disorder prediction 147 163 - -
Mch8g2352 300 MobiDBLite consensus disorder prediction 281 300 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2352 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2046 Mch-Chr1:19888206 Mch8g2352 Mch-Chr8:26685311 5.51E-27 dispersed
Mch3g0979 Mch-Chr3:13593601 Mch8g2352 Mch-Chr8:26685311 5.76E-27 dispersed
Mch4g0104 Mch-Chr4:687986 Mch8g2352 Mch-Chr8:26685311 1.75E-19 dispersed
Mch8g2352 Mch-Chr8:26685311 Mch9g1994 Mch-Chr9:21273676 3.91E-13 dispersed
Mch3g1687 Mch-Chr3:18494573 Mch8g2352 Mch-Chr8:26685311 2.67E-35 wgd
Mch6g0299 Mch-Chr6:1971851 Mch8g2352 Mch-Chr8:26685311 1.20E-38 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1660 . 29 256 TCP Transcription Factor Family AT5G23280 60.7 2.2e-63 239.2
Mch4g1635 . 31 251 TCP Transcription Factor Family AT5G23280 61.5 4.2e-62 235.0
Mch9g2143 . 48 152 TCP Transcription Factor Family AT3G47620 86.0 4.9e-43 172.6
Mch3g1754 . 27 135 TCP Transcription Factor Family AT3G47620 77.1 3.3e-39 159.8
Mch9g2397 . 144 226 TCP Transcription Factor Family AT3G47620 90.4 1.2e-36 151.4
Mch9g2397 . 144 236 TCP Transcription Factor Family AT1G69690 82.8 1.3e-36 150.6
Mch8g1386 . 17 280 TCP Transcription Factor Family AT3G27010 54.9 2.3e-54 209.5
Mch9g1660 . 25 253 TCP Transcription Factor Family AT5G08330 57.3 4.1e-59 224.9
Mch4g1635 . 27 251 TCP Transcription Factor Family AT5G08330 62.9 1.6e-58 223.0
Mch8g2352 . 35 148 TCP Transcription Factor Family AT3G02150 70.0 7.7e-38 154.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006589 2 2 1 2 1 1 2 1 1 1 1 1 2 0 1 2 1 0 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43911 PF03634 TCP 3.10E-28 No_clan Mch TF