Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2368 ATGGGAAGAGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATAAACAGGCAGGTGACATTTGCAAAGAGAAGAAATGGGCTTCTCAAGAAGGCTTATGAACTCTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTTTGTAGCACTTCCAACATGCTCAAAACGCTCGAACGCTACCAAAAATGTAGTTATGGAGCGGTGGAGGTCACGAAACCGGCCAAAGAACTCGAGAGCAGCTATAGAGAATACTTGAAGCTGAAGTCGCGGTTTGAGTCTCTACAACGAACTCAGAGAAACCTTCTTGGTGAGGATTTGGGTCCATTGAACTCAAAGGAGCTTGAGCAGCTAGAGCGTCAGCTAGAGTCTTCTTTGAAGCAAGTTAGGTCCACTAAGACTCAGTACATGCTGGACCAGCTGTCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACCGAGCTCTGACATTAAAGCTGGAAGAAATAAGTTCAAGAAACAACATAAGGCTAACATGGGATGGTGGAGATCAAAGCATGTCATATGGTCCACAGAATGCCCAAACTCAAGGCTTCTTCCAGCCTCTAGATTGCAATCCCACTTTGCAAATTGGGTACACTGCTGCTGTATCAGACCAGATGACAGCCTCCACTGCCCCAACTCATGCCCAACAAGTCAATGGCTTCCTCCCTGGTTGGATGCTTTGA 741 46.02 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKSRFESLQRTQRNLLGEDLGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALTLKLEEISSRNNIRLTWDGGDQSMSYGPQNAQTQGFFQPLDCNPTLQIGYTAAVSDQMTASTAPTHAQQVNGFLPGWML 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26794936 26802428 + MC08g1853 Mch8g2368 695989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2368 246 Pfam K-box region 83 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g2368 246 FunFam MADS-box transcription factor 1 13 87 - -
Mch8g2368 246 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2368 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2368 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 197 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch8g2368 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2368 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2368 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2368 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2368 246 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g2368 246 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2368 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2368 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2368 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch8g2368 246 Coils Coil 121 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1678 Mch-Chr3:18417156 Mch8g2368 Mch-Chr8:26794936 5.59E-93 dispersed
Mch7g0069 Mch-Chr7:694265 Mch8g2368 Mch-Chr8:26794936 2.16E-101 dispersed
Mch7g0070 Mch-Chr7:733753 Mch8g2368 Mch-Chr8:26794936 3.45E-13 dispersed
Mch7g0071 Mch-Chr7:740743 Mch8g2368 Mch-Chr8:26794936 1.80E-28 dispersed
Mch7g0502 Mch-Chr7:8257290 Mch8g2368 Mch-Chr8:26794936 8.23E-08 dispersed
Mch7g0740 Mch-Chr7:12021991 Mch8g2368 Mch-Chr8:26794936 1.27E-60 dispersed
Mch7g0741 Mch-Chr7:12030179 Mch8g2368 Mch-Chr8:26794936 5.95E-38 dispersed
Mch8g0149 Mch-Chr8:929268 Mch8g2368 Mch-Chr8:26794936 2.36E-79 dispersed
Mch8g0275 Mch-Chr8:1878009 Mch8g2368 Mch-Chr8:26794936 3.35E-31 dispersed
Mch8g0911 Mch-Chr8:6519804 Mch8g2368 Mch-Chr8:26794936 5.53E-28 dispersed
Mch8g2368 Mch-Chr8:26794936 Mch9g2117 Mch-Chr9:22066259 1.19E-12 dispersed
Mch8g2368 Mch-Chr8:26794936 Mch8g2369 Mch-Chr8:26813819 1.39E-52 tandem
Mch11g0856 Mch-Chr11:5833313 Mch8g2368 Mch-Chr8:26794936 6.74E-33 transposed
Mch3g1677 Mch-Chr3:18407785 Mch8g2368 Mch-Chr8:26794936 5.11E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43912 PF01486 K-box 5.40E-27 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2368 K09264 - csv:101208204 466.848