Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2369 ATGGGAAGAGGGAGGGTTCAGCTGAAGAGAATCGAGAACAAGATCAGCCGCCAAGTCACCTTCTCAAAGCGTAGAGGTGGGCTGCTCAAAAAGGCCCATGAGATCTCTGTTCTTTGTGATGCTGATGTTGCTTTGATCGTCTTCTCCACTAAAGGGAAGCTCTTTGAGTACTCCACTGATTCCAGCATGGAGAAGATTTTAGAAAGATATGAGAGATATTCCTATGCAGAAAGACCATTTGCCGGAAATGCAGATTCTGAAACACAGGTAAGTTGGTGTCAAGAGTACCCAAAACTTGCAGCTAGATTGGAAATTGTACAGAAGAACTTGAGGAATTATTTGGGACAAGATCTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGACTCATCACTCAAGCGCATAAGAACCAGAAAGAACCAACTGATGCAAGAATCCATTTCAATGTTACACAAAAAGGAAAGGGAATTGCAAGAGGAGAACAGGCAGCTAGCAAATAAGGTAAAGGAGAATGAGAAAGGTATGGCCGAACGTGGACACTGTGACCTGCCAACCTTGGTGCAAAATCAGCCCATTTTTGCAATGCCACCACAACTTCCTTTATCTATTGGAGGAACCTTGCATGAAAGAGGAGGATCAGGTGAAGATGAAACGAGGCCAACAAGCGCCAACGTTCAAATACCAGCATGGATGCTGAGTCATGTGCCCGAAAGGCCTCACAACTAG 741 44.4 MGRGRVQLKRIENKISRQVTFSKRRGGLLKKAHEISVLCDADVALIVFSTKGKLFEYSTDSSMEKILERYERYSYAERPFAGNADSETQVSWCQEYPKLAARLEIVQKNLRNYLGQDLDPLNLRELQSLEQQLDSSLKRIRTRKNQLMQESISMLHKKERELQEENRQLANKVKENEKGMAERGHCDLPTLVQNQPIFAMPPQLPLSIGGTLHERGGSGEDETRPTSANVQIPAWMLSHVPERPHN 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26813819 26821733 + MC08g1854 Mch8g2369 695990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2369 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2369 246 Gene3D - 13 82 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2369 246 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2369 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Mch8g2369 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 192 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch8g2369 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2369 246 Pfam K-box region 86 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g2369 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2369 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2369 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2369 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2369 246 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch8g2369 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch8g2369 246 Coils Coil 126 182 - -
Mch8g2369 246 MobiDBLite consensus disorder prediction 209 246 - -
Mch8g2369 246 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2155 Mch-Chr1:20720472 Mch8g2369 Mch-Chr8:26813819 6.22E-38 dispersed
Mch3g1677 Mch-Chr3:18407785 Mch8g2369 Mch-Chr8:26813819 1.79E-82 dispersed
Mch8g0150 Mch-Chr8:937525 Mch8g2369 Mch-Chr8:26813819 1.00E-65 dispersed
Mch8g2369 Mch-Chr8:26813819 Mch9g2117 Mch-Chr9:22066259 7.57E-14 dispersed
Mch8g2368 Mch-Chr8:26794936 Mch8g2369 Mch-Chr8:26813819 1.39E-52 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43913 PF01486 K-box 1.10E-27 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2369 K09264 - csv:101218674 382.104