Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2398 ATGGGTTCCTCTTCCTCTTCCTTTTCGGTCATCAAATGGTTATTCTTCTCCGCACCCATCTCTCCATCACTGTTTCTTCTCGTCTCTGTCGTCTTCTTCTATCAAACTCAGCTCATCTCCGGCGATTCCGACAAATCCGCGCTTCTTCAGTTCAAAGCTGCGGTCTCCGATCCCTCGGGGTTGCTCTCCGGCTGGAGTGCGAACAGTTCCGACTACTGCTCCTGGTTTGGCATCTCCTGCGGGTTGAATTCGCGGGTTGTGTCGCTCAACATTTCCGGGAATGGTGGCGGAGGTAATTCGAATGGGTTTTCGTGCTCTGATTCTTCTAAATTTCCTCTATATGGATTGGGAGTCAGGAGGGGTTGTGTTGGTAATAGAGGATCGCTGCTGGGGAAGCTTCCGCCGGTGATTGGGAAGCTTACTGAGCTTAAAACTTTGTCGCTTGCCTTCAATGGCTTTGAGGGGGGATTTCCGAGTCAAATCTTGGACATGGAGAACTTGGAGGTTCTTGATCTGGAAGGAAACTCGCTAACTGGGTTGGTTCCCGATGATTTTGCTAGGTTGGGTAAGTTGCGGGTTCTCAACCTTGGGTTCAATAGGATTACTGGTGGGATTCCTAGCTCGCTTTCAGATTGTGCGAGTTTGGAGATCTTGAATTTAGCTGGGAATCAGTTGAATGGGACAATTCCGGAGTTTGTTGGTCGGTTAAGAGGGGTCTACTTGTCTTTCAATTTCTTTACAGGATCCATTACGAGTGAGCTCGGGAATAGCTGTGGGAAGCTTGAGCATCTCGATCTGTCTGGTAATTTTTTGGTCCGTGGGATTCCGAGCAATTTGGGGAATTGCATTCAGTTGCGGACTCTGTTGCTGTATTCTAATATGCTGGAAGAGGCCATTCCAGCCGAAATCGGTAAGCTGCAGAAGCTAGAAGTGCTCGATCTTTCGAGGAATAGCCTGAGCGGTCCGATACCCCCCGAGCTCGGAAACTGCCTGCAGTTGTCCGTCCTCGTGCTCTCGAATCTCTTTGATCCAATTCCCAAGATCAATTACACAGATGAAGACTCTCCAACTGAGGAACTTAGTAATGATAGTTATAACTACTTTGCGGGTTCCATACCTGAGGCAATAACGGCCCTTCCAAAACTGAGGATATTGTGGGCCCCAAGTGCAAACCTCAATGGCCAATTCCCTTCCAAATGGGGTAAGTGTGAAAACTTGGAGATGATCAACTTAGCTTCTAATTACCTTTCTGGGGAGCTTCCTACGGGGTTTAACGTCTGCAAAAAGCTCAAAGTCCTTGATTTAAGCTCGAACCGGCTTTCTGGAGAACTTGATAAAAACCTCCCAGTTGCTTATACGACTCTATTTGATCTTAGCGGTAACAACTTTGATGGTGAGATTCCTATGTTCTGTGACAAGGATTGCCCGCCACTGCGTTCGGATGGATATTTGGGTTTTGCTGATGCATCGTCCCGGTATTTTTCATTTTTTGCCACTAGCGTTCAAGGTGCAACCCCTCTCGAATTTCTTGGAGATGGTGATCTGATAGTACATAACTTCGGGGAAAATAACTTTACAGGCAATCTTTTGTCGTTCCCAATAGCACACGAAAGAATGGGAAGGAGAACTGTTTATGCTTATCTTGTGGGTGGAAATAAGCTCACCGGACCATTTCCTGATAGTTTATTTGAGAAATGCGAGTATTTGGGGGGACTGATCCTTAATGTTAGCAGCAATAGAATATCTGGTCCATTTTCTGTGACATTTGGTAAAAAGTGTAGTTCTCTCAAGTTCTTGGATGCATCTGGGAATCAGATGACTGGGCAGGTACCTGCTAGCTTTGGTGAGCTTTTATCTCTGAATCACCTGAACCTAAGTCGGAACAAGTTTCAGTATCAAATACCGACTTCTCTCGGTCAGGTGGCTGATTTGAAGTACCTTTGTTTGGCTGGCAATAACTTTAATGGTTCTATACCTTCCACCTTAGGTCAGTTGCAGTCTTTGGAGTTGCTGGATCTCTCGTATAACGATCTTTCGGGTGAAATTCCGAGTGATCTTGTTAACTTGAGAGGCCTAAAAGTTCTGCTGCTCAATAATAATTCACTCTCTGGACAGGTTCCCTCTGGTTTGGCAAATGTTACCACGCTATCTGCTTTTAATGTGTCGTTCAATAACTTGTCTGGTTCCCTGCCATCAAGTAACAACATGATTAAATGTAGTGGTGCGATCGGAAATCCTTACCTCCGCTCGTGCCATATGTCTTCTCTGGCGGTGCCATCATCTGAAATGCAAGGTGCGGTGGGCGACCCGAGTAGTCTTGCAGCTTCACCGTCTGGTGCTGCAACCCAAACAAGTGGAGGTGGCAGCTTCAATTCAATTGAGATAGCATCCATTACATCTGCCTCCGCCATTGTTTCTGTTCTTATAGCTTTGATTATTCTGTTTCTATATACCCGAAAGTGGAACACGAGGTCTAAAGTTCTCGGATCAATGAGAAAGGAAGTAACGGTTTTTACTGATATCGGGGTTTCCCTGACATTTGAGAATGTGGTGCGTGCGACAAGTAATTTCAATGCCAGCAACTGCATTGGCAGTGGAGGGTTTGGGGCAACTTACAAGGCAGAGATCTCCTCCGGGGTGTTAGTCGCAATAAAACGGCTTGCTGTAGGTCGGTTTCAAGGCGTCCAACAGTTCGATGCAGAAATTAAAACTCTCGGAAGGCTGCGCCACCCGAATCTAGTCACCTTAATTGGTTACCATGCCAGTGAAACAGAGATGTTTCTGATATATAATTATTTGCCTGGTGGTAATCTGGAAAAATTCATCCAGGAGAGGTCTACAAGGGCGGTTGACTGGAGAATACTTCACAAGATTGCACTGGACATAGCCCGCGCGCTCGCATATCTTCACGATCAGTGTGTACCACGAGTCCTCCACCGCGACGTAAAGCCAAGTAACATACTATTAGACGACGATTTCAATGCTTATCTCTCTGATTTTGGATTGGCCAGGCTTCTCGGGACATCTGAAACCCATGCTACCACAGGTGTGGCTGGAACTTTCGGCTACGTCGCTCCCGAATACGCCATGACTTGCCGTGTCTCCGATAAAGCAGACGTGTACAGTTACGGCGTGGTGCTTCTCGAGCTACTCTCGGACAAGAAAGCGCTAGATCCCTCATTTTCCTCGTACGGTAACGGTTTCAACATCGTAGCTTGGGCATGTATGCTGCTTCGGCAGGGGCGTGCCAAGGAGTTCTTCACATCAGGGTTGTGGGAGGTAGGCCCCCATGACGATCTGGTTGAAGTATTACACTTAGCAGTTGTATGTACAGTTGACTCTCTCTCAACGAGGCCGACGATGAAGCTGGTCGTACGACGGCTTAAGCAGCTACAACCGCCGTCATGT 3408 47.04 MGSSSSSFSVIKWLFFSAPISPSLFLLVSVVFFYQTQLISGDSDKSALLQFKAAVSDPSGLLSGWSANSSDYCSWFGISCGLNSRVVSLNISGNGGGGNSNGFSCSDSSKFPLYGLGVRRGCVGNRGSLLGKLPPVIGKLTELKTLSLAFNGFEGGFPSQILDMENLEVLDLEGNSLTGLVPDDFARLGKLRVLNLGFNRITGGIPSSLSDCASLEILNLAGNQLNGTIPEFVGRLRGVYLSFNFFTGSITSELGNSCGKLEHLDLSGNFLVRGIPSNLGNCIQLRTLLLYSNMLEEAIPAEIGKLQKLEVLDLSRNSLSGPIPPELGNCLQLSVLVLSNLFDPIPKINYTDEDSPTEELSNDSYNYFAGSIPEAITALPKLRILWAPSANLNGQFPSKWGKCENLEMINLASNYLSGELPTGFNVCKKLKVLDLSSNRLSGELDKNLPVAYTTLFDLSGNNFDGEIPMFCDKDCPPLRSDGYLGFADASSRYFSFFATSVQGATPLEFLGDGDLIVHNFGENNFTGNLLSFPIAHERMGRRTVYAYLVGGNKLTGPFPDSLFEKCEYLGGLILNVSSNRISGPFSVTFGKKCSSLKFLDASGNQMTGQVPASFGELLSLNHLNLSRNKFQYQIPTSLGQVADLKYLCLAGNNFNGSIPSTLGQLQSLELLDLSYNDLSGEIPSDLVNLRGLKVLLLNNNSLSGQVPSGLANVTTLSAFNVSFNNLSGSLPSSNNMIKCSGAIGNPYLRSCHMSSLAVPSSEMQGAVGDPSSLAASPSGAATQTSGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNTRSKVLGSMRKEVTVFTDIGVSLTFENVVRATSNFNASNCIGSGGFGATYKAEISSGVLVAIKRLAVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSSYGNGFNIVAWACMLLRQGRAKEFFTSGLWEVGPHDDLVEVLHLAVVCTVDSLSTRPTMKLVVRRLKQLQPPSC 1136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27056801 27060208 - MC08g1882 Mch8g2398 696019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2398 1136 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 821 932 - -
Mch8g2398 1136 PRINTS Leucine-rich repeat signature 430 443 - -
Mch8g2398 1136 PRINTS Leucine-rich repeat signature 665 678 - -
Mch8g2398 1136 SUPERFAMILY L domain-like 236 734 - -
Mch8g2398 1136 Gene3D Ribonuclease Inhibitor 234 359 IPR032675 -
Mch8g2398 1136 MobiDBLite consensus disorder prediction 762 786 - -
Mch8g2398 1136 Pfam Protein kinase domain 860 1057 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2398 1136 ProSiteProfiles Protein kinase domain profile. 857 1131 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2398 1136 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 933 1135 - -
Mch8g2398 1136 Pfam Leucine rich repeat N-terminal domain 42 80 IPR013210 -
Mch8g2398 1136 Gene3D Transferase(Phosphotransferase) domain 1 933 1133 - -
Mch8g2398 1136 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 255 346 - -
Mch8g2398 1136 SMART LRR_typ_2 617 641 IPR003591 -
Mch8g2398 1136 SMART LRR_typ_2 213 236 IPR003591 -
Mch8g2398 1136 SMART LRR_typ_2 188 212 IPR003591 -
Mch8g2398 1136 SMART LRR_typ_2 306 330 IPR003591 -
Mch8g2398 1136 SMART LRR_typ_2 164 187 IPR003591 -
Mch8g2398 1136 SMART LRR_typ_2 258 282 IPR003591 -
Mch8g2398 1136 SMART LRR_typ_2 665 689 IPR003591 -
Mch8g2398 1136 Gene3D Ribonuclease Inhibitor 41 233 IPR032675 -
Mch8g2398 1136 Gene3D Ribonuclease Inhibitor 546 757 IPR032675 -
Mch8g2398 1136 SMART serkin_6 857 1109 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2398 1136 CDD STKc_IRAK 863 1131 - -
Mch8g2398 1136 Pfam Leucine Rich Repeat 429 448 IPR001611 GO:0005515(InterPro)
Mch8g2398 1136 Pfam Leucine Rich Repeat 308 330 IPR001611 GO:0005515(InterPro)
Mch8g2398 1136 Pfam Leucine Rich Repeat 692 712 IPR001611 GO:0005515(InterPro)
Mch8g2398 1136 Pfam Leucine Rich Repeat 644 665 IPR001611 GO:0005515(InterPro)
Mch8g2398 1136 Pfam Leucine Rich Repeat 595 617 IPR001611 GO:0005515(InterPro)
Mch8g2398 1136 Pfam Leucine Rich Repeat 214 236 IPR001611 GO:0005515(InterPro)
Mch8g2398 1136 Pfam Leucine Rich Repeat 619 640 IPR001611 GO:0005515(InterPro)
Mch8g2398 1136 Pfam Leucine Rich Repeat 667 689 IPR001611 GO:0005515(InterPro)
Mch8g2398 1136 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515(InterPro)
Mch8g2398 1136 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 26 101 IPR052592 -
Mch8g2398 1136 SUPERFAMILY Protein kinase-like (PK-like) 842 1128 IPR011009 -
Mch8g2398 1136 ProSitePatterns Serine/Threonine protein kinases active-site signature. 977 989 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g2398 1136 ProSitePatterns Protein kinases ATP-binding region signature. 863 885 IPR017441 GO:0005524(InterPro)
Mch8g2398 1136 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 360 444 - -
Mch8g2398 1136 Gene3D Ribonuclease Inhibitor 360 533 IPR032675 -
Mch8g2398 1136 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 513 756 - -
Mch8g2398 1136 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515(InterPro)
Mch8g2398 1136 Gene3D Phosphorylase Kinase; domain 1 819 932 - -
Mch8g2398 1136 SUPERFAMILY L domain-like 43 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g2398 Mch-Chr8:27056801 Mch9g2017 Mch-Chr9:21439862 5.09E-62 dispersed
Mch4g1606 Mch-Chr4:19285858 Mch8g2398 Mch-Chr8:27056801 1.70E-133 transposed
Mch4g2421 Mch-Chr4:25193825 Mch8g2398 Mch-Chr8:27056801 1.98E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77628 PF00069 Pkinase 1.50E-43 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2398 - - - 0.0