Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2403 ATGGGGGAGTGTGGGTGTTTGGTTTCAGAGCTTGGAGGAGAGAAACAGCTCATTGCTGCTGCTAATTTCATTATTAAGGCTTTAGGTTCTGACATAACCATTTCAGATGATGCAAAGAAGGTTTTGGCCGATCTTTGCACAGAGTTATCTTTAGTTGTTTCACGGAATCAGCGAGCCGATGTTGTCGAAATCGAAGTCGAGGGGACGGAGATTGGGGAAGTTGAAGAGATTGAGAGTAGGCTTAAAGTAGTGCAGGAGAAAATCATGGTTTGGGAAGCAGATCAGTCCATGATATGGGACTCTGCTGCTCCGGATGATGCTTCGGAGTATCTGAACGCTGCAGATGAAGCCCGGGAATTGGTTAGCAAGTTGGAGGGTTTGTGTTTGAGTAAAGATGAAGGAGATTTTGAACTGTCGAGGAAGGCGCACGATGTTCTTCAAACGGCTATGGCAAGGCTTGAGGAAGAGTTTAGGCACTTGCTTGCTAGAAGTAGCCTTGAATTTCAGCTTGAGAGTGTGTCTGTGCACTCCACGGAAGATGCTGTGGATGATGGATCGACACACTTATATCGAGATGAATCGTTTGAGGCTTCGGTTCGGAGTAGTAGTGTTGGCAGAAACTTGGAGAATTCTATCATCGATTTGGTCAACCCAGATGCGGTTTGTGAGCTCATGGGCATAGCAAATGTCATGTTCAAGTCTGGTTATGATCAGGAGTGCATCCAGGCTTACAATCATCTTCGTCGGGACGCTTTAAATGAGTGCCTCTTGACTCTTGAAATGGAGAAAATGAGCATTGAGGATGTGCTGAAAATGGATTGGGTTACCTTGAACTCGAAGATCAGGAAATGGAACCGAGCAATGAAGCGATTCGTGCGGGTCTATCTACCTAGCGAAAAATGCCTTTGTGATCAAATTTTTGGGGAGGAAGGATCGGTTAGTTTGACTTGTTTTGTTGAATCATCAAAGGCATCAATGCTGCAATTTCTGAACTTTGGCGAGGCCATGGCCATAGGCCCTCATACACCAGAAAAATTGAATCGCATTCTCGAAATGTATGAGGTCGTTGAAGAGCTTCTCTCGGATATCGATGCGTTATACTGTGATGAAGTTGGTTATCATGTTAGGATTGAGTATCATGATGTTCAAAAGAGTCTAGGACATTCTGTGAGAGCTACATTTCTCGAGTTCGGGAAAGCTATTGCGGCAAACACGTCACCGCACCCGTTTGCAGGCGGTGGAATCCATCATCTAACCAAATACGTGATGAATTACCTTATGATTCTTACTGATTATAGCGAATCCCTGAATTTTCTCCTCAAGGATGGAGAAGATATGTATCCCATTTCACCATCATGCTCTATGAATTCAAGTAGAGAAAGAGAAGAAGAAAGCGAAAGCAGAGGTTCGTGTTCAGGCGAGTTCTCCCCGATGGCTCGCCATTTTCGTTCGGTTGCTACAATTCTAGAGAATAACCTCGAGGAGAAGTCGAAGCAGTACAAAGATGCTGCTCTACAGCAATTCTTCTTGATGAACAACATACATTACATGGCTCAAAAGGTGAGGGGTTCGGAGCTTAGCCAGATATTCGGGGAGGATTGGATTCGTAAACACTACGGGAAGTTCCAGCAGCAGGCGATGAACTACGAGAGGGCTAGTTGGAATTCAATACTCTCATACCTTCGGGAGGATCCCGGTTCTAATTCGGAGTCGAAAAACGTGCTGAAAGAGAGGTTGCGCAGCTTCAATGTTGCTTTCGAGGAGATTTACAAAACCCAAACCTCGTGGATCATTCACGACTCTCGGCTTCGTGAAGATCTGCGGATCTCGACGTCGCTGAGGGTGATCCATGCATATAGAGCATTCTTTGGAAGGTGTAATAACCATGTAAGTGACAAGCTTATCAAGTACAGTCCAGATGATTTGGAGGGTTACCTTCTTGATCTCTTTGAGGGATCTCCAAAATCATTGCCCAACACCAATAGGAGGTGA 1992 45.08 MGECGCLVSELGGEKQLIAAANFIIKALGSDITISDDAKKVLADLCTELSLVVSRNQRADVVEIEVEGTEIGEVEEIESRLKVVQEKIMVWEADQSMIWDSAAPDDASEYLNAADEARELVSKLEGLCLSKDEGDFELSRKAHDVLQTAMARLEEEFRHLLARSSLEFQLESVSVHSTEDAVDDGSTHLYRDESFEASVRSSSVGRNLENSIIDLVNPDAVCELMGIANVMFKSGYDQECIQAYNHLRRDALNECLLTLEMEKMSIEDVLKMDWVTLNSKIRKWNRAMKRFVRVYLPSEKCLCDQIFGEEGSVSLTCFVESSKASMLQFLNFGEAMAIGPHTPEKLNRILEMYEVVEELLSDIDALYCDEVGYHVRIEYHDVQKSLGHSVRATFLEFGKAIAANTSPHPFAGGGIHHLTKYVMNYLMILTDYSESLNFLLKDGEDMYPISPSCSMNSSREREEESESRGSCSGEFSPMARHFRSVATILENNLEEKSKQYKDAALQQFFLMNNIHYMAQKVRGSELSQIFGEDWIRKHYGKFQQQAMNYERASWNSILSYLREDPGSNSESKNVLKERLRSFNVAFEEIYKTQTSWIIHDSRLREDLRISTSLRVIHAYRAFFGRCNNHVSDKLIKYSPDDLEGYLLDLFEGSPKSLPNTNRR 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27097657 27100161 + MC08g1886 Mch8g2403 696024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2403 663 Coils Coil 74 94 - -
Mch8g2403 663 Gene3D Exocyst complex component Exo70 86 660 - -
Mch8g2403 663 Pfam Exo70 exocyst complex subunit C-terminal 283 648 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Mch8g2403 663 Coils Coil 143 163 - -
Mch8g2403 663 Pfam Exocyst complex component Exo70 N-terminal 81 162 - -
Mch8g2403 663 Coils Coil 486 506 - -
Mch8g2403 663 MobiDBLite consensus disorder prediction 451 473 - -
Mch8g2403 663 PANTHER EXOCYST COMPLEX PROTEIN EXO70 70 653 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Mch8g2403 663 SUPERFAMILY Cullin repeat-like 90 651 IPR016159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2403 K07195 - - csv:101204348 1045.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1694 Mch-Chr3:18525102 Mch8g2403 Mch-Chr8:27097657 2.38E-161 dispersed
Mch8g0626 Mch-Chr8:4514228 Mch8g2403 Mch-Chr8:27097657 5.67E-37 dispersed
Mch8g2403 Mch-Chr8:27097657 Mch9g1872 Mch-Chr9:20415757 7.52E-78 dispersed
Mch8g2403 Mch-Chr8:27097657 Mch3g1347 Mch-Chr3:16160475 1.62E-137 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1872 . 10 654 EXO70 exocyst subunit family AT5G03540 76.5 3.9e-285 977.2
Mch1g0977 . 1 637 EXO70 exocyst subunit family AT5G03540 70.1 8.2e-259 889.8
Mch1g0977 . 1 637 EXO70 exocyst subunit family AT5G52340 77.7 2.8e-288 987.6
Mch9g1872 . 1 654 EXO70 exocyst subunit family AT5G52340 74.0 6.0e-275 943.3
Mch1g0977 . 145 629 EXO70 exocyst subunit family AT5G52350 61.4 1.1e-169 593.6
Mch9g1872 . 147 654 EXO70 exocyst subunit family AT5G52350 59.1 3.2e-166 582.0
Mch3g0050 . 1 623 EXO70 exocyst subunit family AT5G58430 66.9 4.1e-244 840.9
Mch3g0050 . 1 622 EXO70 exocyst subunit family AT1G07000 51.4 1.4e-172 603.2
Mch5g0938 . 54 663 EXO70 exocyst subunit family AT5G13150 53.8 2.6e-180 629.0
Mch4g1670 . 68 671 EXO70 exocyst subunit family AT5G13990 53.6 4.8e-185 644.8
Mch8g1301 . 7 604 EXO70 exocyst subunit family AT1G72470 65.2 2.8e-216 748.4
Mch8g1301 . 4 602 EXO70 exocyst subunit family AT1G54090 62.3 1.2e-211 733.0
Mch8g1301 . 4 603 EXO70 exocyst subunit family AT3G14090 64.1 4.1e-220 761.1
Mch8g2403 . 10 664 EXO70 exocyst subunit family AT3G29400 50.1 3.4e-164 575.5
Mch6g0064 . 13 650 EXO70 exocyst subunit family AT5G50380 62.1 2.4e-229 792.0
Mch3g1347 . 21 659 EXO70 exocyst subunit family AT5G50380 62.6 2.2e-227 785.4
Mch8g0375 . 1 687 EXO70 exocyst subunit family AT4G31540 71.2 5.5e-290 993.4
Mch9g1604 . 34 576 EXO70 exocyst subunit family AT3G55150 50.2 2.3e-149 526.2
Mch5g1815 . 27 639 EXO70 exocyst subunit family AT3G09520 52.9 5.3e-175 611.3
Mch5g1814 . 27 638 EXO70 exocyst subunit family AT3G09520 52.9 7.7e-174 607.4
Mch2g0943 . 7 604 EXO70 exocyst subunit family AT5G59730 50.2 2.2e-160 562.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010540 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 32