Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2415 ATGGCCAATCCATCAAACAATTTGCTTCTTTGCTTGCCATTTTTGGCCATTTTTGTCCAAGCCATGGGCTCTAGACTAGTCCCATTGGGTTATCAAAGCATAGACACGACTTGGTACGATGGTCGTGCCACATTCTACGGTGATATGAGTGGTGCTGAAACTATGCAGGGAGCTTGCGGGTACGGAAACTTATTCGAGCAAGGGTACGGCCTGCGAACAGCGGCGCTAAGCACGGCGCTATTCAACAACGGCGCGGCGTGCGGCGCGTGCTTCGAAATACGGTGCGTGGACGCGCCTCAGTCGTGTATTCCACGCGCCGGCAGCATAAAAATCACGGCCACCAATTTCTGCCCCCCAAACTACACGAAAACCCACGACATCTGGTGCAATCCGCCGCAGCGCCACTTCGATCTCTCCCAGTACATGTTCACCAGAATCGCCCGCTACCGGGCCGGCGTCATCCCCGTCAGCTACCGCCGGATCCCCTGCTGGAAGCGCTGCGGCGTCAAGTTCAAACTCGCCGGAAACCCGTACTGGCTGCTGGTGCTGGTGTTCAACGTGGGCGGCGCCGGCGACGTGGCCGACGTCAAGATCAGAGGATCCGGAGGCGAGTGGGTTCAGATGAGGAGGAATTGGGGGCAGAATTGGGCGACCGGAGAGCGATTGGTGGGGCGGAGCTTGTCGTTCCGAGTCACCACCAGCGATTCCAAAACGATTCAACTCGACGGAGTTGTGCCCGGCGATTGGCGGTTCGGGCAGACCTTTGAAGGGAGGGCAAATTTC 783 57.85 MANPSNNLLLCLPFLAIFVQAMGSRLVPLGYQSIDTTWYDGRATFYGDMSGAETMQGACGYGNLFEQGYGLRTAALSTALFNNGAACGACFEIRCVDAPQSCIPRAGSIKITATNFCPPNYTKTHDIWCNPPQRHFDLSQYMFTRIARYRAGVIPVSYRRIPCWKRCGVKFKLAGNPYWLLVLVFNVGGAGDVADVKIRGSGGEWVQMRRNWGQNWATGERLVGRSLSFRVTTSDSKTIQLDGVVPGDWRFGQTFEGRANF 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27193490 27195444 - MC08g1896 Mch8g2415 696036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2415 261 Gene3D - 165 261 IPR036749 -
Mch8g2415 261 CDD DPBB_EXPA_N 38 163 - -
Mch8g2415 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 168 IPR007112 -
Mch8g2415 261 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Mch8g2415 261 PRINTS Expansin/Lol pI family signature 151 167 IPR007118 GO:0005576(InterPro)
Mch8g2415 261 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576(InterPro)
Mch8g2415 261 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Mch8g2415 261 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Mch8g2415 261 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576(InterPro)
Mch8g2415 261 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Mch8g2415 261 SMART dpbb_1 73 158 IPR007112 -
Mch8g2415 261 SUPERFAMILY Barwin-like endoglucanases 11 186 IPR036908 -
Mch8g2415 261 PANTHER EXPANSIN-A15 14 258 IPR002963 GO:0009664(InterPro)
Mch8g2415 261 Pfam Lytic transglycolase 73 158 IPR009009 -
Mch8g2415 261 SUPERFAMILY PHL pollen allergen 166 257 IPR036749 -
Mch8g2415 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 257 IPR007117 -
Mch8g2415 261 Gene3D - 29 163 IPR036908 -
Mch8g2415 261 PRINTS Expansin signature 167 179 IPR002963 GO:0009664(InterPro)
Mch8g2415 261 PRINTS Expansin signature 126 143 IPR002963 GO:0009664(InterPro)
Mch8g2415 261 PRINTS Expansin signature 68 82 IPR002963 GO:0009664(InterPro)
Mch8g2415 261 PRINTS Expansin signature 109 119 IPR002963 GO:0009664(InterPro)
Mch8g2415 261 PRINTS Expansin signature 214 235 IPR002963 GO:0009664(InterPro)
Mch8g2415 261 PRINTS Expansin signature 179 200 IPR002963 GO:0009664(InterPro)
Mch8g2415 261 PRINTS Expansin signature 243 259 IPR002963 GO:0009664(InterPro)
Mch8g2415 261 PRINTS Expansin signature 95 106 IPR002963 GO:0009664(InterPro)
Mch8g2415 261 PRINTS Expansin signature 143 156 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g2415 Mch-Chr8:27193490 Mch9g2116 Mch-Chr9:22063783 1.30E-93 dispersed
Mch8g2415 Mch-Chr8:27193490 Mch9g1554 Mch-Chr9:17825037 2.66E-95 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2415 - - - 0.0