Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2431 ATGGGGTTTAAATTTTCAAAGCCGAGTCAGGGGAAGATGGACCACCTAAGTCTGCAACACCACCTCATAAATTATCTATCAAAAAGCTTTTACATCCGTAACTTGGTATCCAAGAAAAGGAGGCGCATGCTTGTTGCGGGTTATGATCTTGACATGTCATACATCACAGATCATGTATTGGCGATGTCGTTCCCTGCAGAACGTATGCGTGCAATGTATCGTAATCCGCTATGGCAGGTTAAGTCCGTATTGGACATGAGGCATCAAGGACATTACAAGATCTATAATCTCTGTATTGAAGAATCATATGATCCAACACATTTTCATGGCCGTGTGGAGTCATTTCCTTTTGATGATAATCATGTCCCACATCTAGAGATGATCAAACTTTTCTGTGAAAATGTTTCTTCATGGCTCTCGTCCCACCCAAAGAATATTGCTGTCGTACATTGCATGGCTGGAAAAGGTCGAACGGGATTGATGGTATGTGCCTACTTAGTTTACTGTGGCACGTCAGTGGAGGATGCACTTCAGTTGTATGCTCAGAGGCGGACAACCAATAATGAAGGGGTATCAATTCCAAGCCAACGACGGTATGTGGGCTACTGGGGAAAGTGTCTTTCTTTTCCCAAGGGGGTTCATAATGGACCTCCAGAGGTGAATTTGCCCGAACCATGTCGGAGAGAGTTGCAGAGAATACGTCTTTATGACACAGTTAACACCGAGTCAATTTTCTTCGTGGTCTCAGAATTGCAGGAGGTTCCTTCTCAGTTATACCGTCCATCTATGGAACTTACCAGGAATCGTTGCAGACAATTTAAAAGAGGTTATGAGAGAAGTAACAGTCCTCGTTATTTTCTATCTTTTGTTGAAGGTGATAATGAAGGGAACGAGTCAGAATTAGAACCCCATCTTGTTGTTCAAATGGATACAGAGTGTTCAGCGCTATACAATAAAAACTGCCTTGACTACAATTTTGAGAACCCACTACCACTAACTGGAGATGTGCGTATCATATTCTACGCAAAGATGTTTGGAGGGCGTCTCTTCTATGCTTGCTTCAACACAGCTTTCATTAAAAACAGCTTGCTACAGCTGAGGTTGCAGGATCTGGACAAAGTTGGGAAAAAGGGAAAGTCAATTTGTGGTCCTTCCTTCTGCTTGGAGTTGGTATTTGGTCCTGCAAATGCAAAACACTCATTTTCGACTTTGTCAGAGATCGAAGATCCTAGCAACGATTTGTCTTAA 1248 42.63 MGFKFSKPSQGKMDHLSLQHHLINYLSKSFYIRNLVSKKRRRMLVAGYDLDMSYITDHVLAMSFPAERMRAMYRNPLWQVKSVLDMRHQGHYKIYNLCIEESYDPTHFHGRVESFPFDDNHVPHLEMIKLFCENVSSWLSSHPKNIAVVHCMAGKGRTGLMVCAYLVYCGTSVEDALQLYAQRRTTNNEGVSIPSQRRYVGYWGKCLSFPKGVHNGPPEVNLPEPCRRELQRIRLYDTVNTESIFFVVSELQEVPSQLYRPSMELTRNRCRQFKRGYERSNSPRYFLSFVEGDNEGNESELEPHLVVQMDTECSALYNKNCLDYNFENPLPLTGDVRIIFYAKMFGGRLFYACFNTAFIKNSLLQLRLQDLDKVGKKGKSICGPSFCLELVFGPANAKHSFSTLSEIEDPSNDLS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27315402 27321540 + MC08g1912 Mch8g2431 696052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2431 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 299 394 IPR035892 -
Mch8g2431 415 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 207 IPR029021 -
Mch8g2431 415 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 125 184 IPR000387 GO:0016311(InterPro)
Mch8g2431 415 Pfam C2 domain of PTEN tumour-suppressor protein 313 393 IPR014020 -
Mch8g2431 415 SMART PTEN_C2_2 223 394 IPR014020 -
Mch8g2431 415 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 113 170 - -
Mch8g2431 415 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 30 396 IPR051281 GO:0004725(PANTHER)|GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)|GO:0046856(PANTHER)
Mch8g2431 415 ProSiteProfiles C2 tensin-type domain profile. 241 395 IPR014020 -
Mch8g2431 415 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 28 210 - -
Mch8g2431 415 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311(InterPro)
Mch8g2431 415 Gene3D - 273 397 - -
Mch8g2431 415 CDD PTP_PTEN 51 205 IPR045101 GO:0016791(InterPro)
Mch8g2431 415 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
Mch8g2431 415 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g1234 Mch-Chr1:14663349 Mch8g2431 Mch-Chr8:27315402 4.81E-43 dispersed
Mch8g2431 Mch-Chr8:27315402 Mch4g0722 Mch-Chr4:4880494 2.08E-43 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2431 K01110 - csv:101212127 789.26