Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g2434 | ATGGCGGCCCCAAAACCCCAGAGGTCACCTGAGGAAGTCGAAGACATAATCCTTCGAAAAGTCTTCATCGTCTCCCTCGTCGATTTCCCCGCTTCCGATTCCCGAATCGTCTACCTCGAGCAGACCGCCGCCGAGCTCCTCAGCGAGGGCAAGGAATTGAGGTTTTCCAGAGATATGATGGAGCGGGTCATAATCGATCGGCTGTCGGGGGATTTCCCCGACGCGGAGCCGCCGTTCCAGTACTTGATCGGCTGCTACCGTAGGGCTCACGACGAGAGTAAGAAAATCGGTTCAATGAAGGATAGGAATTTGAGGGCTCTGATGGAAATTGCGCTGAAGAAAGCCAAGAAATTGACTGTTTCGTATTGCAGGATTCATTTGGGGAATCCCGAATTGTTCTCCAGTGGGGCGAATTCTAAGGCCAACACTCCGTCTCTGCTTCCGTTGATTTTCTCTGAGATTGGAAGCTCGGTGGATGGGTTTGGGGGTAGCAGCAGTGTCGGTGGAGGGGTTCACTGTCCTCCGGGGTTCTTGGAGGAGTTTCTCCAGGATTCGGATTTCGATACATTGGACCCTATTTTGAGGGGGGTGTACGAGGATTTGAGGGGTAGTGTCCTTAAAGTTTCGGCTCTTGGGAACTTCCAGCAGCCCTTAAGGGCACTGAGGTTTCTGGTTAGTTTTCCTGTTGGGGCTAAATCTCTGGTGAATCACCCTTGGTGGATTCCTACTGGGAAATATTCAAATGGGCGTGTCATTGAGATGACAAGCATTTTGGGGCCTTTTTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTCAAGAGCCAACCTGATGTTGGGCAGCAGTGCTTTTCAGAAGCATCAACTCGTAGACCATCTGATTTGTTATCTTCATTCACTACAATTAAAACAGTTATGAATAACTTATATGATGGCCTTGCGGAAGTTCTTCTCTCTCTTCTTAAGAACACAGAGACCCGTGAGAATGTTCTTGAGTATCTTGCGGAGGTGATAAATAGAAACTCATCAAGAGCTCATATGCAGGTCGATCCTCTCTCCTGTGCAAGTTCAGGCATGTTTGTTAATCTCAGTTCCATCATGCTACGTCTCTGTGAGCCATTTCTTGATGCAAACATGACCAAAAGGGATAAAATTGATCCAAAATATGTATGTTATGGTAACCGCTTGGAGTTAAGAGGGTTAACTGCTCTACATGCGTCATCGGAGGAGGTTACCGAGTGGATTAATAATGGTACTGAGTTGAAAACTGATGACTCTGGGCAGTTCAGTGATAGTGAAAATCGCTTGCTACAATCTCAAGAAGCTTCCAGTTCTGGCAGTAATGCTATTGGATCTTCAACTGCGAAGGCAAGATCAAGTAGTGATAAAACTAGGTACCCCTTCATATGTGAGTGCTTCTTTATGACTGGAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAACATTTAGTACAGGATATTTCTAGGTGTGAAGATACCTTGTCCACACTTAAAGCAATGCAGGGACAAGGGTCTGCTCCACAGTTTGATGTGGATATAGCTCGCCTCGAGAAAGAAATAGAGTTGTACTCGCAGGAAAAGCTTTGTTATGAAGCTCAAATACTGAGGGACGGGTCACTAATCCAGCAAGCTCTTACTTTCTATCGATTAATGGTCGTCTGGTTAGTTGGTTTGATTGGTGGATTCAAAATGCCTCTTCCGTCAACTTGCCCTATGGAATTTGCATCAATTCCAGAGCATTTTGTGGAAGATGCAATGGAATTGCTTATATTTGCTTCCCGGATACCAAAAGCTTTGGATGGTATCAATTTGGATGATTTTATGAACTTCATTATTATGTTTATGGCAAGTCCAGAATACATCAGAAATCCTTACTTAAGAGCAAAGATGGTCGAAGTTCTGAACTGCTGGATTCCTCGTAGAAGTGCTTCATCTGTAACTGCAACATTATTTGAAGGGCACCAGCTATCACTTGAATATCTTGTTAGGAATCTTTTAAAGCTCTATGTTGACATTGAGTTCACTGGTTCACACACTCAGTTTTATGACAAGTTCAACATCCGTCATAATATCGCCGAACTTCTTGAATACCTTTGGCAGGTTCCTAGTCACCGCAATGCTTGGAGAATGATTGCCAAGGAAGAGGAAAAGGGTGTTTACTTGAATTTCTTGAATTTCCTTATCAACGATAGTATATATCTTCTTGACGAAAGCCTTAATAAGATTCTCGAACTCAAAGAGCTTGAAGCCGAAATGTCGAATACCACAGAGTGGGAGCGGCGGCCTGCTTCAGAGAGGCAAGAGAGAACTAGGCTGTTTCACTCCCAAGAAAATATCATCCGAATTGATATGAAATTAGCCAACGAGGATGTGAGTATGCTGGAATTTACATCGGAGCAAATTACGGCTCCTTTCCTACTTCCCGAGATGGTCGAAAGGGTGGCCAGCATGCTGAATTATTTTCTACTGCAACTCGTTGGTCCTCAGCGAAAATCTCTTACTCTTAAAGACCCCGAAAAATACGAATTCCGTCCAAGAGAGTTGCTTAAGCAGATTGTTCACATATATGTTCATCTGGCAAGAGGCGATACGGAGAAAATTTTCCCAGCTGCCATTTCAAAGGACGGTCGATCGTACAACGAGCAGTTGTTTAATGCTGCTGCAGCTGTACTTGGACGAATTGGAGAAGATGGTAGGATAATACAGGAGTTCATTGATCTTGGCAACAAAGCCAAGGATGCAGCTTCTGAGGCCATGGATGCTGAAGCTACTCTTGGAGACATACCGGATGAATTCCTCGACCCGATCCAATACACTTTGATGAAGGATCCAGTGATCTTACCTTCTTCAAGGATCACGGTCGACAGACCCGTCATCCAAAGACATCTCCTCAGCGATAGCACCGATCCATTCAACCGGTCACATCTAACTTCAGACATGCTAATACCGAATGATGAACTGAAAGCAAGAATTGAAGAATTTATCAGGTCGCAAGAATTGAAGAGGAAACCCGAGGGAGGGGTTGCGATGCAGAAGGCAACAATTCAACCCACAAGCGGAGAAATGTTGATTGATTAA | 3111 | 44.65 | MAAPKPQRSPEEVEDIILRKVFIVSLVDFPASDSRIVYLEQTAAELLSEGKELRFSRDMMERVIIDRLSGDFPDAEPPFQYLIGCYRRAHDESKKIGSMKDRNLRALMEIALKKAKKLTVSYCRIHLGNPELFSSGANSKANTPSLLPLIFSEIGSSVDGFGGSSSVGGGVHCPPGFLEEFLQDSDFDTLDPILRGVYEDLRGSVLKVSALGNFQQPLRALRFLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPSDLLSSFTTIKTVMNNLYDGLAEVLLSLLKNTETRENVLEYLAEVINRNSSRAHMQVDPLSCASSGMFVNLSSIMLRLCEPFLDANMTKRDKIDPKYVCYGNRLELRGLTALHASSEEVTEWINNGTELKTDDSGQFSDSENRLLQSQEASSSGSNAIGSSTAKARSSSDKTRYPFICECFFMTGRVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGSAPQFDVDIARLEKEIELYSQEKLCYEAQILRDGSLIQQALTFYRLMVVWLVGLIGGFKMPLPSTCPMEFASIPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSASSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTTEWERRPASERQERTRLFHSQENIIRIDMKLANEDVSMLEFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPRELLKQIVHIYVHLARGDTEKIFPAAISKDGRSYNEQLFNAAAAVLGRIGEDGRIIQEFIDLGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPNDELKARIEEFIRSQELKRKPEGGVAMQKATIQPTSGEMLID | 1036 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 27341528 | 27348517 | + | MC08g1914 | Mch8g2434 | 696055 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g2434 | 1036 | MobiDBLite | consensus disorder prediction | 422 | 456 | - | - | |
Mch8g2434 | 1036 | Pfam | U-box domain | 939 | 1009 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Mch8g2434 | 1036 | SMART | Ubox_2 | 942 | 1005 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Mch8g2434 | 1036 | ProSiteProfiles | U-box domain profile. | 938 | 1012 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Mch8g2434 | 1036 | MobiDBLite | consensus disorder prediction | 1016 | 1036 | - | - | |
Mch8g2434 | 1036 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 938 | 1016 | IPR013083 | - | |
Mch8g2434 | 1036 | SUPERFAMILY | RING/U-box | 931 | 1010 | - | - | |
Mch8g2434 | 1036 | PANTHER | UBIQUITINATION FACTOR E4 | 8 | 1014 | IPR045132 | GO:0000151(InterPro)|GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030433(PANTHER)|GO:0034450(InterPro)|GO:0034450(PANTHER)|GO:0036503(InterPro) | |
Mch8g2434 | 1036 | CDD | RING-Ubox_UBE4A | 941 | 1009 | - | - | |
Mch8g2434 | 1036 | FunFam | Ubiquitin conjugation factor e4 a | 938 | 1016 | - | - | |
Mch8g2434 | 1036 | Pfam | Ubiquitin elongating factor core | 258 | 922 | IPR019474 | GO:0000151(InterPro)|GO:0006511(InterPro)|GO:0016567(InterPro)|GO:0034450(InterPro) | |
Mch8g2434 | 1036 | Coils | Coil | 524 | 544 | - | - |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch8g2434 | K10597 | - | csv:101211398 | 1850.87 |