Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2434 ATGGCGGCCCCAAAACCCCAGAGGTCACCTGAGGAAGTCGAAGACATAATCCTTCGAAAAGTCTTCATCGTCTCCCTCGTCGATTTCCCCGCTTCCGATTCCCGAATCGTCTACCTCGAGCAGACCGCCGCCGAGCTCCTCAGCGAGGGCAAGGAATTGAGGTTTTCCAGAGATATGATGGAGCGGGTCATAATCGATCGGCTGTCGGGGGATTTCCCCGACGCGGAGCCGCCGTTCCAGTACTTGATCGGCTGCTACCGTAGGGCTCACGACGAGAGTAAGAAAATCGGTTCAATGAAGGATAGGAATTTGAGGGCTCTGATGGAAATTGCGCTGAAGAAAGCCAAGAAATTGACTGTTTCGTATTGCAGGATTCATTTGGGGAATCCCGAATTGTTCTCCAGTGGGGCGAATTCTAAGGCCAACACTCCGTCTCTGCTTCCGTTGATTTTCTCTGAGATTGGAAGCTCGGTGGATGGGTTTGGGGGTAGCAGCAGTGTCGGTGGAGGGGTTCACTGTCCTCCGGGGTTCTTGGAGGAGTTTCTCCAGGATTCGGATTTCGATACATTGGACCCTATTTTGAGGGGGGTGTACGAGGATTTGAGGGGTAGTGTCCTTAAAGTTTCGGCTCTTGGGAACTTCCAGCAGCCCTTAAGGGCACTGAGGTTTCTGGTTAGTTTTCCTGTTGGGGCTAAATCTCTGGTGAATCACCCTTGGTGGATTCCTACTGGGAAATATTCAAATGGGCGTGTCATTGAGATGACAAGCATTTTGGGGCCTTTTTTCCATGTCAGTGCTCTGCCTGACCATGCCATTTTCAAGAGCCAACCTGATGTTGGGCAGCAGTGCTTTTCAGAAGCATCAACTCGTAGACCATCTGATTTGTTATCTTCATTCACTACAATTAAAACAGTTATGAATAACTTATATGATGGCCTTGCGGAAGTTCTTCTCTCTCTTCTTAAGAACACAGAGACCCGTGAGAATGTTCTTGAGTATCTTGCGGAGGTGATAAATAGAAACTCATCAAGAGCTCATATGCAGGTCGATCCTCTCTCCTGTGCAAGTTCAGGCATGTTTGTTAATCTCAGTTCCATCATGCTACGTCTCTGTGAGCCATTTCTTGATGCAAACATGACCAAAAGGGATAAAATTGATCCAAAATATGTATGTTATGGTAACCGCTTGGAGTTAAGAGGGTTAACTGCTCTACATGCGTCATCGGAGGAGGTTACCGAGTGGATTAATAATGGTACTGAGTTGAAAACTGATGACTCTGGGCAGTTCAGTGATAGTGAAAATCGCTTGCTACAATCTCAAGAAGCTTCCAGTTCTGGCAGTAATGCTATTGGATCTTCAACTGCGAAGGCAAGATCAAGTAGTGATAAAACTAGGTACCCCTTCATATGTGAGTGCTTCTTTATGACTGGAAGGGTGCTGAATTTGGGCTTGTTAAAAGCATTTTCAGACTTCAAACATTTAGTACAGGATATTTCTAGGTGTGAAGATACCTTGTCCACACTTAAAGCAATGCAGGGACAAGGGTCTGCTCCACAGTTTGATGTGGATATAGCTCGCCTCGAGAAAGAAATAGAGTTGTACTCGCAGGAAAAGCTTTGTTATGAAGCTCAAATACTGAGGGACGGGTCACTAATCCAGCAAGCTCTTACTTTCTATCGATTAATGGTCGTCTGGTTAGTTGGTTTGATTGGTGGATTCAAAATGCCTCTTCCGTCAACTTGCCCTATGGAATTTGCATCAATTCCAGAGCATTTTGTGGAAGATGCAATGGAATTGCTTATATTTGCTTCCCGGATACCAAAAGCTTTGGATGGTATCAATTTGGATGATTTTATGAACTTCATTATTATGTTTATGGCAAGTCCAGAATACATCAGAAATCCTTACTTAAGAGCAAAGATGGTCGAAGTTCTGAACTGCTGGATTCCTCGTAGAAGTGCTTCATCTGTAACTGCAACATTATTTGAAGGGCACCAGCTATCACTTGAATATCTTGTTAGGAATCTTTTAAAGCTCTATGTTGACATTGAGTTCACTGGTTCACACACTCAGTTTTATGACAAGTTCAACATCCGTCATAATATCGCCGAACTTCTTGAATACCTTTGGCAGGTTCCTAGTCACCGCAATGCTTGGAGAATGATTGCCAAGGAAGAGGAAAAGGGTGTTTACTTGAATTTCTTGAATTTCCTTATCAACGATAGTATATATCTTCTTGACGAAAGCCTTAATAAGATTCTCGAACTCAAAGAGCTTGAAGCCGAAATGTCGAATACCACAGAGTGGGAGCGGCGGCCTGCTTCAGAGAGGCAAGAGAGAACTAGGCTGTTTCACTCCCAAGAAAATATCATCCGAATTGATATGAAATTAGCCAACGAGGATGTGAGTATGCTGGAATTTACATCGGAGCAAATTACGGCTCCTTTCCTACTTCCCGAGATGGTCGAAAGGGTGGCCAGCATGCTGAATTATTTTCTACTGCAACTCGTTGGTCCTCAGCGAAAATCTCTTACTCTTAAAGACCCCGAAAAATACGAATTCCGTCCAAGAGAGTTGCTTAAGCAGATTGTTCACATATATGTTCATCTGGCAAGAGGCGATACGGAGAAAATTTTCCCAGCTGCCATTTCAAAGGACGGTCGATCGTACAACGAGCAGTTGTTTAATGCTGCTGCAGCTGTACTTGGACGAATTGGAGAAGATGGTAGGATAATACAGGAGTTCATTGATCTTGGCAACAAAGCCAAGGATGCAGCTTCTGAGGCCATGGATGCTGAAGCTACTCTTGGAGACATACCGGATGAATTCCTCGACCCGATCCAATACACTTTGATGAAGGATCCAGTGATCTTACCTTCTTCAAGGATCACGGTCGACAGACCCGTCATCCAAAGACATCTCCTCAGCGATAGCACCGATCCATTCAACCGGTCACATCTAACTTCAGACATGCTAATACCGAATGATGAACTGAAAGCAAGAATTGAAGAATTTATCAGGTCGCAAGAATTGAAGAGGAAACCCGAGGGAGGGGTTGCGATGCAGAAGGCAACAATTCAACCCACAAGCGGAGAAATGTTGATTGATTAA 3111 44.65 MAAPKPQRSPEEVEDIILRKVFIVSLVDFPASDSRIVYLEQTAAELLSEGKELRFSRDMMERVIIDRLSGDFPDAEPPFQYLIGCYRRAHDESKKIGSMKDRNLRALMEIALKKAKKLTVSYCRIHLGNPELFSSGANSKANTPSLLPLIFSEIGSSVDGFGGSSSVGGGVHCPPGFLEEFLQDSDFDTLDPILRGVYEDLRGSVLKVSALGNFQQPLRALRFLVSFPVGAKSLVNHPWWIPTGKYSNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPSDLLSSFTTIKTVMNNLYDGLAEVLLSLLKNTETRENVLEYLAEVINRNSSRAHMQVDPLSCASSGMFVNLSSIMLRLCEPFLDANMTKRDKIDPKYVCYGNRLELRGLTALHASSEEVTEWINNGTELKTDDSGQFSDSENRLLQSQEASSSGSNAIGSSTAKARSSSDKTRYPFICECFFMTGRVLNLGLLKAFSDFKHLVQDISRCEDTLSTLKAMQGQGSAPQFDVDIARLEKEIELYSQEKLCYEAQILRDGSLIQQALTFYRLMVVWLVGLIGGFKMPLPSTCPMEFASIPEHFVEDAMELLIFASRIPKALDGINLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWIPRRSASSVTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRMIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTTEWERRPASERQERTRLFHSQENIIRIDMKLANEDVSMLEFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPRELLKQIVHIYVHLARGDTEKIFPAAISKDGRSYNEQLFNAAAAVLGRIGEDGRIIQEFIDLGNKAKDAASEAMDAEATLGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDSTDPFNRSHLTSDMLIPNDELKARIEEFIRSQELKRKPEGGVAMQKATIQPTSGEMLID 1036
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27341528 27348517 + MC08g1914 Mch8g2434 696055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2434 1036 MobiDBLite consensus disorder prediction 422 456 - -
Mch8g2434 1036 Pfam U-box domain 939 1009 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch8g2434 1036 SMART Ubox_2 942 1005 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch8g2434 1036 ProSiteProfiles U-box domain profile. 938 1012 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch8g2434 1036 MobiDBLite consensus disorder prediction 1016 1036 - -
Mch8g2434 1036 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 938 1016 IPR013083 -
Mch8g2434 1036 SUPERFAMILY RING/U-box 931 1010 - -
Mch8g2434 1036 PANTHER UBIQUITINATION FACTOR E4 8 1014 IPR045132 GO:0000151(InterPro)|GO:0000209(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030433(PANTHER)|GO:0034450(InterPro)|GO:0034450(PANTHER)|GO:0036503(InterPro)
Mch8g2434 1036 CDD RING-Ubox_UBE4A 941 1009 - -
Mch8g2434 1036 FunFam Ubiquitin conjugation factor e4 a 938 1016 - -
Mch8g2434 1036 Pfam Ubiquitin elongating factor core 258 922 IPR019474 GO:0000151(InterPro)|GO:0006511(InterPro)|GO:0016567(InterPro)|GO:0034450(InterPro)
Mch8g2434 1036 Coils Coil 524 544 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2434 K10597 - csv:101211398 1850.87