Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2439 ATGGATAGAACCAGAGCTTTCTACACACAGAAAAATACAGCTATGGAGGCGCTGAGGCGAAGGTGGGTCGGCGCTGCGGCGGCGTTGGTGGCGGTGCTGCTGGCGTTGGCGGCGGTGCCGGAAGTGTCGGCGACGCGGTGGACTGTGGGGGGAAACATGGGGTGGACGACCAATTTCAACTACACTATCTGGGCTCAGGGGAAGCACTTCTATTATGATGACTGGCTCTTTTTTGTGTACGACAGGAACCAAATGAATGTGTTGGAAGTGAACAAAACAGACTATGAGAGCTGCAATTCAGATCACCCACTCCACAACTACACCACAGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGGCCCTATTACTTCATCAGTGGCAAGGGCTTCTGCTATGGAGGCATGAAGCTCGCCATCCACGTCGAACACCTACCGCCCCCGCCCTCCGCCTCCGTCTCCGACATGAAGAGCACTGCCCCAATGTCCACTCCGGTCCCCCACACCGCGCTCGTTTTAACTGCTCTTCTCGCCCTCACCCTCACTAGCTAG 555 55.5 MDRTRAFYTQKNTAMEALRRRWVGAAAALVAVLLALAAVPEVSATRWTVGGNMGWTTNFNYTIWAQGKHFYYDDWLFFVYDRNQMNVLEVNKTDYESCNSDHPLHNYTTGAGRDVVHLNVTRPYYFISGKGFCYGGMKLAIHVEHLPPPPSASVSDMKSTAPMSTPVPHTALVLTALLALTLTS 184
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27376337 27378171 + MC08g1918 Mch8g2439 696060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2439 184 Pfam Plastocyanin-like domain 55 137 IPR003245 GO:0009055(InterPro)
Mch8g2439 184 SUPERFAMILY Cupredoxins 44 143 IPR008972 -
Mch8g2439 184 Gene3D - 43 146 IPR008972 -
Mch8g2439 184 PANTHER BLUE COPPER PROTEIN 33 149 IPR039391 GO:0009055(InterPro)|GO:0046658(PANTHER)
Mch8g2439 184 ProSiteProfiles Phytocyanin domain profile. 45 145 IPR003245 GO:0009055(InterPro)
Mch8g2439 184 FunFam Lamin-like protein 43 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2439 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g2439 Mch-Chr8:27376337 Mch8g2440 Mch-Chr8:27389124 1.56E-32 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch11g1162 . 11 128 Phytocyanin Superfamily AT3G20570 59.7 3.8e-37 151.8
Mch4g2169 . 19 140 Phytocyanin Superfamily AT1G48940 53.7 7.3e-37 150.6
Mch8g2439 . 31 140 Phytocyanin Superfamily AT3G01070 66.7 8.1e-38 153.7
Mch8g0503 . 8 172 Phytocyanin Superfamily AT2G25060 54.5 1.4e-43 172.9
Mch8g2439 . 28 159 Phytocyanin Superfamily AT5G15350 61.7 2.1e-44 175.6
Mch8g0503 . 6 172 Phytocyanin Superfamily AT4G31840 52.9 2.5e-45 178.7
Mch4g2169 . 19 140 Phytocyanin Superfamily AT1G48940 53.7 7.3e-37 150.6
Mch11g1162 . 11 128 Phytocyanin Superfamily AT3G20570 59.7 3.8e-37 151.8
Mch8g0503 . 11 171 Phytocyanin Superfamily AT5G25090 51.2 1.4e-38 156.4
Mch8g0503 . 8 172 Phytocyanin Superfamily AT2G25060 54.5 1.4e-43 172.9
Mch8g0503 . 6 172 Phytocyanin Superfamily AT4G31840 52.9 2.5e-45 178.7
Mch8g2439 . 31 140 Phytocyanin Superfamily AT3G01070 66.7 8.1e-38 153.7
Mch8g2439 . 28 159 Phytocyanin Superfamily AT5G15350 61.7 2.1e-44 175.6
Mch6g1074 . 26 131 Phytocyanin Superfamily AT2G27035 61.3 2.1e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006590 2 1 3 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 38