Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch8g2446 | ATGGATGTGGTGGCGGTAAAAGAAGATAGGACCGTTGACGTGTTTCTAAGAAACTACAAGCTGGGAAGAACTCTTGGAATTGGGGCAACTGGAAAAGTAAAAATTGCACAACATAAATTAACTGGACATAAAGTTGCCATTAAGATCCTCAATCGTCACAAGATAGCCAAGATGGGTTTGGAAGATAAAGTAAGAAGAGAGATTAAAATAATGAAGTTGTTTATGCATCCTCACATCGTACAACTATATGAAGTTATAGAGACACCAACTGATACCTATGTAGTAATGGAGTATGTCAAAAATGGAGAACTCTTTGATTATATTGTGGAGAAGGGTAGGTTGAAGGAAGATGAAGCTCGTAGGCTTTTCCAGCAGGTAATATCTGGAGTGGAGCACTGTCACAGAAATATGATAGTTCATCGAGATCTTAAGCCTGAAAATGTGTTATTGGATTCTGAATTGAATGTAAAGATAGCTGATTTCGGTTTTAGCAATGTCATGTATGATGGGCATTTCCTCAAGACAAGTTGTGGGAGTCCTAACTATGCTGCTCCTGAGGTTATTAGTGGGAAATTGTATCCCGGGCCTGAAGTAGACATATGGAGCTGTGGGGTTATATTGTATGCTCTTCTTTGTGGTTTTCTTCCATTTGATGATGAAAACATTCCCATCCTTCGTTATAAAATAAAGAATGGAGTGTATAATCTTCCAAGGCACTTATCAACTGAGGCAAAGGACTTGATCGCAAGGATACTTGTAGTTGATCCACTAAGACGAATAACAATACCACAAATAAGGCAACATCCATGGTTTCAAGCTCATCTTCCTCGCTATTTAGCCCTCAAACCAATCTCTATTACCCAACAAGTTCAAAAGGTGATTACTTACTTTACTTTACGCCTTCTAATAATACACTCGTATTTCAATTATGTACGATTTTTATCTGTGAATTTTGTAGTTCATCTGTCAATTTTAACTTTAAACTTTTTAAGGCATGAATTTGAAAACGTAACTGAATTTAAAACACGTAAATTTCCTTGTTGCCTAGTTTCATATATTTGTATGCTTCTTCAGATTGACGAGGATGTTCTCCAAAGAGTGGTTATGATGGGATTTAACAGGAATAAGTTGGTTGAGTCTCTTCGTAATAGAACTAAAAATGAGGCAACGGTCACTTACTATTTACTAGTAGGCGATCGGTCCCCTATTTCTGGTGGCTATCTTGGTGCTGAGTTCCATGAATTAATGGAACCTAACAATATGAGTCCAAATGTTGCCACGTGTCACTCAAATTTCATTCATTCAAATGTTGCCACGTGGCCTTCTTTTGGAGTTATGGGCCTCACCCCTCAGATTCCAGTTAATGGGAAATGGGCTCTTGGATTACAGGCTAAAGCAAACCCACGTGATATAATGATAAAAGTGCTAAAAGTGCTACAAGAGCTGAATGTGTGTTGGAAGAAGATTGGAGATTACAACATGAAATGTAAGCTAACACAAGAGACTCCATCCCATTTCCAACCCACCATCATGCCCACTCATGGTCTTGTTACTATATTGCAAAATGTGGTCAAGTTTGAAGTTCAGCTTTACAAAATGCAAGAGGAGAAGTATCTGCTTGATCTGCAGAGGATTCAAGGCCCTCAGTTTCTATTCTTGAACCTTTGTGCTTCCTTCATTTCCCAACTTCGAGTCGTTTAA | 1701 | 38.33 | MDVVAVKEDRTVDVFLRNYKLGRTLGIGATGKVKIAQHKLTGHKVAIKILNRHKIAKMGLEDKVRREIKIMKLFMHPHIVQLYEVIETPTDTYVVMEYVKNGELFDYIVEKGRLKEDEARRLFQQVISGVEHCHRNMIVHRDLKPENVLLDSELNVKIADFGFSNVMYDGHFLKTSCGSPNYAAPEVISGKLYPGPEVDIWSCGVILYALLCGFLPFDDENIPILRYKIKNGVYNLPRHLSTEAKDLIARILVVDPLRRITIPQIRQHPWFQAHLPRYLALKPISITQQVQKVITYFTLRLLIIHSYFNYVRFLSVNFVVHLSILTLNFLRHEFENVTEFKTRKFPCCLVSYICMLLQIDEDVLQRVVMMGFNRNKLVESLRNRTKNEATVTYYLLVGDRSPISGGYLGAEFHELMEPNNMSPNVATCHSNFIHSNVATWPSFGVMGLTPQIPVNGKWALGLQAKANPRDIMIKVLKVLQELNVCWKKIGDYNMKCKLTQETPSHFQPTIMPTHGLVTILQNVVKFEVQLYKMQEEKYLLDLQRIQGPQFLFLNLCASFISQLRVV | 566 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 27426918 | 27437427 | + | MC08g1924 | Mch8g2446 | 696067 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch8g2446 | 566 | SUPERFAMILY | Protein kinase-like (PK-like) | 15 | 310 | IPR011009 | - | |
Mch8g2446 | 566 | SUPERFAMILY | KA1-like | 394 | 565 | IPR028375 | - | |
Mch8g2446 | 566 | FunFam | Non-specific serine/threonine protein kinase | 3 | 100 | - | - | |
Mch8g2446 | 566 | Pfam | UBA/TS-N domain | 359 | 395 | IPR015940 | - | |
Mch8g2446 | 566 | FunFam | Non-specific serine/threonine protein kinase | 461 | 564 | - | - | |
Mch8g2446 | 566 | ProSiteProfiles | Protein kinase domain profile. | 19 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch8g2446 | 566 | ProSiteProfiles | Kinase associated domain 1 (KA1) profile. | 517 | 565 | IPR001772 | - | |
Mch8g2446 | 566 | Pfam | Protein kinase domain | 19 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch8g2446 | 566 | FunFam | Non-specific serine/threonine protein kinase | 100 | 283 | - | - | |
Mch8g2446 | 566 | CDD | AMPKA_C | 457 | 563 | - | - | |
Mch8g2446 | 566 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 358 | 398 | IPR015940 | - | |
Mch8g2446 | 566 | Gene3D | Kinase associated domain 1, KA1 | 461 | 564 | - | - | |
Mch8g2446 | 566 | Gene3D | - | 357 | 398 | - | - | |
Mch8g2446 | 566 | ProSitePatterns | Protein kinases ATP-binding region signature. | 25 | 48 | IPR017441 | GO:0005524(InterPro) | |
Mch8g2446 | 566 | PANTHER | MAP/MICROTUBULE AFFINITY-REGULATING KINASE | 15 | 292 | - | GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER) | |
Mch8g2446 | 566 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 138 | 150 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch8g2446 | 566 | CDD | STKc_AMPK_alpha | 16 | 271 | - | - | |
Mch8g2446 | 566 | SMART | uba_6 | 360 | 397 | IPR015940 | - | |
Mch8g2446 | 566 | SMART | serkin_6 | 19 | 271 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch8g2446 | 566 | Gene3D | Transferase(Phosphotransferase) domain 1 | 9 | 306 | - | - | |
Mch8g2446 | 566 | CDD | UBA_SnRK1_plant | 359 | 396 | - | - | |
Mch8g2446 | 566 | Pfam | Kinase associated domain 1 | 523 | 565 | IPR001772 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch7g0771 | Mch-Chr7:12338304 | Mch8g2446 | Mch-Chr8:27426918 | 1.16E-230 | dispersed | |
Mch8g2446 | Mch-Chr8:27426918 | Mch8g2989 | Mch-Chr8:32521646 | 1.64E-73 | dispersed | |
Mch8g2446 | Mch-Chr8:27426918 | Mch5g0519 | Mch-Chr5:3443746 | 1.19E-79 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77629 | PF00069 | Pkinase | 1.50E-77 | CL0016 | Mch | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch8g2446 | K07198 | - | csv:101214585 | 485.723 |