Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2446 ATGGATGTGGTGGCGGTAAAAGAAGATAGGACCGTTGACGTGTTTCTAAGAAACTACAAGCTGGGAAGAACTCTTGGAATTGGGGCAACTGGAAAAGTAAAAATTGCACAACATAAATTAACTGGACATAAAGTTGCCATTAAGATCCTCAATCGTCACAAGATAGCCAAGATGGGTTTGGAAGATAAAGTAAGAAGAGAGATTAAAATAATGAAGTTGTTTATGCATCCTCACATCGTACAACTATATGAAGTTATAGAGACACCAACTGATACCTATGTAGTAATGGAGTATGTCAAAAATGGAGAACTCTTTGATTATATTGTGGAGAAGGGTAGGTTGAAGGAAGATGAAGCTCGTAGGCTTTTCCAGCAGGTAATATCTGGAGTGGAGCACTGTCACAGAAATATGATAGTTCATCGAGATCTTAAGCCTGAAAATGTGTTATTGGATTCTGAATTGAATGTAAAGATAGCTGATTTCGGTTTTAGCAATGTCATGTATGATGGGCATTTCCTCAAGACAAGTTGTGGGAGTCCTAACTATGCTGCTCCTGAGGTTATTAGTGGGAAATTGTATCCCGGGCCTGAAGTAGACATATGGAGCTGTGGGGTTATATTGTATGCTCTTCTTTGTGGTTTTCTTCCATTTGATGATGAAAACATTCCCATCCTTCGTTATAAAATAAAGAATGGAGTGTATAATCTTCCAAGGCACTTATCAACTGAGGCAAAGGACTTGATCGCAAGGATACTTGTAGTTGATCCACTAAGACGAATAACAATACCACAAATAAGGCAACATCCATGGTTTCAAGCTCATCTTCCTCGCTATTTAGCCCTCAAACCAATCTCTATTACCCAACAAGTTCAAAAGGTGATTACTTACTTTACTTTACGCCTTCTAATAATACACTCGTATTTCAATTATGTACGATTTTTATCTGTGAATTTTGTAGTTCATCTGTCAATTTTAACTTTAAACTTTTTAAGGCATGAATTTGAAAACGTAACTGAATTTAAAACACGTAAATTTCCTTGTTGCCTAGTTTCATATATTTGTATGCTTCTTCAGATTGACGAGGATGTTCTCCAAAGAGTGGTTATGATGGGATTTAACAGGAATAAGTTGGTTGAGTCTCTTCGTAATAGAACTAAAAATGAGGCAACGGTCACTTACTATTTACTAGTAGGCGATCGGTCCCCTATTTCTGGTGGCTATCTTGGTGCTGAGTTCCATGAATTAATGGAACCTAACAATATGAGTCCAAATGTTGCCACGTGTCACTCAAATTTCATTCATTCAAATGTTGCCACGTGGCCTTCTTTTGGAGTTATGGGCCTCACCCCTCAGATTCCAGTTAATGGGAAATGGGCTCTTGGATTACAGGCTAAAGCAAACCCACGTGATATAATGATAAAAGTGCTAAAAGTGCTACAAGAGCTGAATGTGTGTTGGAAGAAGATTGGAGATTACAACATGAAATGTAAGCTAACACAAGAGACTCCATCCCATTTCCAACCCACCATCATGCCCACTCATGGTCTTGTTACTATATTGCAAAATGTGGTCAAGTTTGAAGTTCAGCTTTACAAAATGCAAGAGGAGAAGTATCTGCTTGATCTGCAGAGGATTCAAGGCCCTCAGTTTCTATTCTTGAACCTTTGTGCTTCCTTCATTTCCCAACTTCGAGTCGTTTAA 1701 38.33 MDVVAVKEDRTVDVFLRNYKLGRTLGIGATGKVKIAQHKLTGHKVAIKILNRHKIAKMGLEDKVRREIKIMKLFMHPHIVQLYEVIETPTDTYVVMEYVKNGELFDYIVEKGRLKEDEARRLFQQVISGVEHCHRNMIVHRDLKPENVLLDSELNVKIADFGFSNVMYDGHFLKTSCGSPNYAAPEVISGKLYPGPEVDIWSCGVILYALLCGFLPFDDENIPILRYKIKNGVYNLPRHLSTEAKDLIARILVVDPLRRITIPQIRQHPWFQAHLPRYLALKPISITQQVQKVITYFTLRLLIIHSYFNYVRFLSVNFVVHLSILTLNFLRHEFENVTEFKTRKFPCCLVSYICMLLQIDEDVLQRVVMMGFNRNKLVESLRNRTKNEATVTYYLLVGDRSPISGGYLGAEFHELMEPNNMSPNVATCHSNFIHSNVATWPSFGVMGLTPQIPVNGKWALGLQAKANPRDIMIKVLKVLQELNVCWKKIGDYNMKCKLTQETPSHFQPTIMPTHGLVTILQNVVKFEVQLYKMQEEKYLLDLQRIQGPQFLFLNLCASFISQLRVV 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27426918 27437427 + MC08g1924 Mch8g2446 696067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2446 566 SUPERFAMILY Protein kinase-like (PK-like) 15 310 IPR011009 -
Mch8g2446 566 SUPERFAMILY KA1-like 394 565 IPR028375 -
Mch8g2446 566 FunFam Non-specific serine/threonine protein kinase 3 100 - -
Mch8g2446 566 Pfam UBA/TS-N domain 359 395 IPR015940 -
Mch8g2446 566 FunFam Non-specific serine/threonine protein kinase 461 564 - -
Mch8g2446 566 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2446 566 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 517 565 IPR001772 -
Mch8g2446 566 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2446 566 FunFam Non-specific serine/threonine protein kinase 100 283 - -
Mch8g2446 566 CDD AMPKA_C 457 563 - -
Mch8g2446 566 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 358 398 IPR015940 -
Mch8g2446 566 Gene3D Kinase associated domain 1, KA1 461 564 - -
Mch8g2446 566 Gene3D - 357 398 - -
Mch8g2446 566 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524(InterPro)
Mch8g2446 566 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 15 292 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Mch8g2446 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g2446 566 CDD STKc_AMPK_alpha 16 271 - -
Mch8g2446 566 SMART uba_6 360 397 IPR015940 -
Mch8g2446 566 SMART serkin_6 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2446 566 Gene3D Transferase(Phosphotransferase) domain 1 9 306 - -
Mch8g2446 566 CDD UBA_SnRK1_plant 359 396 - -
Mch8g2446 566 Pfam Kinase associated domain 1 523 565 IPR001772 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch7g0771 Mch-Chr7:12338304 Mch8g2446 Mch-Chr8:27426918 1.16E-230 dispersed
Mch8g2446 Mch-Chr8:27426918 Mch8g2989 Mch-Chr8:32521646 1.64E-73 dispersed
Mch8g2446 Mch-Chr8:27426918 Mch5g0519 Mch-Chr5:3443746 1.19E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77629 PF00069 Pkinase 1.50E-77 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2446 K07198 - csv:101214585 485.723