Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2460 ATGGAGTTTTTGGGGCCCTTTTTCGTGGCTTTTCTGGCGCTGCTGTGTTGTGCCGCCGACGGAGAAGGCGGCGGCGGATGGATTAACGCTCACGCCACCTTCTACGGCGGCAGCGATGCTTCCGGCACAATGGGTGGGGCTTGTGGGTACGGGAATCTGTACAGTGAAGGCTACGGAGCCAACACAGCGGCAGTGAGCGCTGCGCTATTCAACAATGGACTGAGCTGTGGGTGTTGCTACGAGATCAAGTGCGTGGGTGACCCCAAGTGGTGCCGCCCGGGCTCCATTTTGGTCACCGCCACCAACTTCTGTCCGCCAAATAGCGCCCTCCCCAGCACCGCCGGCGGCTGGTGCAACCCGCCCCTCCACCACTTCGACCTCTCCCAGCCCCTCTTCCTCCACATTGCCCAATGCCGTGCCGGAATCGTCCCTGTCGCCTATCGGAAGACTCCCTGCAGGAGAAGGGGAGGAATAAGGTTCACGATCAACGGGCATTCGTACTTCAATTTGGTCCTGATCACAAACGTCGGCGGCGCCGGCGATGTTCGTGCGGTTTCTGTGAAAGGGTCGACGAGTGGGTGGCAAGCGATGTCCAGAAACTGGGGCCAAAACTGGCAGAACAATAACTTTCTGGATGGGCAGACACTCTCTTTCAAAATCACCACCAGCGACGGCCGTACTCTCGTTTCCGACAATGTGGCCCCGGCTGGCTGGTCCTTTGGCCAAACCTTCACCGGTGCCCGTTTCGATGAACATCCAACCCTATCGTACTAG 774 58.91 MEFLGPFFVAFLALLCCAADGEGGGGWINAHATFYGGSDASGTMGGACGYGNLYSEGYGANTAAVSAALFNNGLSCGCCYEIKCVGDPKWCRPGSILVTATNFCPPNSALPSTAGGWCNPPLHHFDLSQPLFLHIAQCRAGIVPVAYRKTPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVRAVSVKGSTSGWQAMSRNWGQNWQNNNFLDGQTLSFKITTSDGRTLVSDNVAPAGWSFGQTFTGARFDEHPTLSY 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27539492 27541046 - MC08g1937 Mch8g2460 696081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2460 257 Gene3D - 17 153 IPR036908 -
Mch8g2460 257 FunFam Expansin 157 249 - -
Mch8g2460 257 FunFam Expansin 17 153 - -
Mch8g2460 257 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Mch8g2460 257 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Mch8g2460 257 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576(InterPro)
Mch8g2460 257 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576(InterPro)
Mch8g2460 257 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Mch8g2460 257 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576(InterPro)
Mch8g2460 257 CDD DPBB_EXPA_N 26 152 - -
Mch8g2460 257 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Mch8g2460 257 Gene3D - 157 249 IPR036749 -
Mch8g2460 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Mch8g2460 257 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Mch8g2460 257 SUPERFAMILY Barwin-like endoglucanases 10 175 IPR036908 -
Mch8g2460 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Mch8g2460 257 Pfam Lytic transglycolase 62 147 IPR009009 -
Mch8g2460 257 SMART dpbb_1 62 147 IPR007112 -
Mch8g2460 257 PANTHER EXPANSIN-A15 9 248 IPR002963 GO:0009664(InterPro)
Mch8g2460 257 PRINTS Expansin signature 132 145 IPR002963 GO:0009664(InterPro)
Mch8g2460 257 PRINTS Expansin signature 156 168 IPR002963 GO:0009664(InterPro)
Mch8g2460 257 PRINTS Expansin signature 203 224 IPR002963 GO:0009664(InterPro)
Mch8g2460 257 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Mch8g2460 257 PRINTS Expansin signature 168 189 IPR002963 GO:0009664(InterPro)
Mch8g2460 257 PRINTS Expansin signature 232 248 IPR002963 GO:0009664(InterPro)
Mch8g2460 257 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Mch8g2460 257 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Mch8g2460 257 PRINTS Expansin signature 115 132 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1733 Mch-Chr3:18778987 Mch8g2460 Mch-Chr8:27539492 3.81E-122 dispersed
Mch6g0242 Mch-Chr6:1592357 Mch8g2460 Mch-Chr8:27539492 9.11E-132 dispersed
Mch8g2460 Mch-Chr8:27539492 Mch9g2116 Mch-Chr9:22063783 5.85E-148 dispersed
Mch4g2319 Mch-Chr4:24548151 Mch8g2460 Mch-Chr8:27539492 7.11E-129 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2460 - - - 0.0