Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2499 ATGGGTTCAATCAACTGGCTGGGGTTCTCTCTGTCCCCACAAGATCAGCAACCGCCCTCCGATCATCCACACGGCGGCTCCGTCGCCTTCAACTCCGGCGACGTCGTCTCCGGCGTCTGCTTTTCCGACAACCCTCCTCTTCCTTCTTCCTATGCCGTCTTCGAAGACTTCAACGACCGCCACACTACTCACTCTCAAGATTGGAATAGTATGAAGGATTTAGGGTCGACACAAAGCTCGGATTTTTGTATGCTAATGGGGACAGCTTCGTGTAGTAGTGAAAGCATAGAAACTCAGCACCAACCCAAGCTTGAAAATTTCCTCGGCCGACACTCTTTCACCGACCACGACGCCGCCGCCTACACCAATGTTTCCGGCAACTACATGTTCCAAAACTGTTCTTTACAGCTTCCATCTGAGGGAAGCGGCGGTGGCGGTGGTGGAAGAGCCAGCGCCGCCAACAACAGTAGCTCTATTGGGTTATCTATGATCAAGACGTGGCTGAGAAATCAGCCGGCGCCGCCGCAGGCGGTGGGCAAGAGCGACGGAGATCACGACGGCGCGCTTGGAGGGCTGCACCATGGTGGTGCCATTACAAACGCGCACACTTTATCGCTCTCGATGAACACCGGGCCGCCGCAGTCCGGCTCGGCGGCCTTGCCACTTCTCACGGCCAACGGCGGTGGAAGCGGCGGCGAAAGCTCCTCGTCCGACAACAAGCAACCCAAATCCACGGCTACCGACGTGGATGGCGAAAACGGCACCGTCGAAGCTGTCCCGAGAAAATCCGTCGATACATTCGGACAAAGAACTTCCATTTACCGCGGCGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTGTGGGACAACAGTTGTAGAAGAGAAGGACAAACTAGAAAAGGAAGACAAGGAGGTTATGACAAGGAAGAAAAGGCAGCAAGAGCCTACGATTTAGCAGCACTCAAATACTGGGGTACCACAACCACAACCAATTTTCCAATTAGTGATTACGAAAAAGAGGTTGAAGACATGAAGCACATGACCAGGCAAGAGTTTGTTGCGTCTCTCAGAAGGAAGAGTAGCGGGTTTTCTCGAGGAGCTTCCATTTATCGTGGAGTAACAAGGCATCACCAGCATGGGAGATGGCAAGCCAGGATAGGGAGAGTTGCTGGGAATAAAGATCTCTACCTGGGAACTTTCAGTACGCAAGAGGAAGCAGCAGAGGCATACGACATAGCAGCGATAAAGTTCAGAGGACTAAACGCAGTGACCAACTTCGACATGAGCCGATACGACGTCAAAGCGATTCTTGAGAGCAACAGTTTACCAATCGGTGGTGCCGCCAAGCGCCTTAAAGACATCGACCACTCCGACATGTCGACCCTTGACCCCCACCGCTCGGACGACAACCACCACCACCACCACCTCTCCGATGGAATAATCACCACCACCTCCTACGCCGGTGGCGGATGGCCTACTCTCGCCTTCCACCACCACCATCCCTACGCCTACGCGGTGGGTGGTCATGGCCCACAGCAGCATTCCCAGAGGGCGGCGTGGTGCAAGCAAGAGCAGCACGACGTTGCTGCTGCCGCCGACAACTTCTTCCAGCATGGCGTTGTCCTGGACCCAATGGACCACAATGGAGGAGATCATGGGTACGGTCACAGCGGCACCTACGTCATCCCGCCAGCAGAAGGGAGCAGCAACAACACTAACAACCATGCCTTGAACTACATCAGTTCAGACCATGGCGGCCACGGCGATCAGGTGAATCTATTTGGTGGATTCAACTTGTATAATTACCATTCTCAATCTCAGCAGCTGCATCCGTCGCCGCCCTCCGCCCAACCCTCTGTCTGGCTTCCGCCGCCGAGGTCCGTTTGTCACGGCGGAGCTCCTCCCCCGCCTTTCACCATTTGGAATGACACATAA 1944 54.58 MGSINWLGFSLSPQDQQPPSDHPHGGSVAFNSGDVVSGVCFSDNPPLPSSYAVFEDFNDRHTTHSQDWNSMKDLGSTQSSDFCMLMGTASCSSESIETQHQPKLENFLGRHSFTDHDAAAYTNVSGNYMFQNCSLQLPSEGSGGGGGGRASAANNSSSIGLSMIKTWLRNQPAPPQAVGKSDGDHDGALGGLHHGGAITNAHTLSLSMNTGPPQSGSAALPLLTANGGGSGGESSSSDNKQPKSTATDVDGENGTVEAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKEVEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNSLPIGGAAKRLKDIDHSDMSTLDPHRSDDNHHHHHLSDGIITTTSYAGGGWPTLAFHHHHPYAYAVGGHGPQQHSQRAAWCKQEQHDVAAAADNFFQHGVVLDPMDHNGGDHGYGHSGTYVIPPAEGSSNNTNNHALNYISSDHGGHGDQVNLFGGFNLYNYHSQSQQLHPSPPSAQPSVWLPPPRSVCHGGAPPPPFTIWNDT 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27903072 27908622 + MC08g1969 Mch8g2499 696120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2499 647 MobiDBLite consensus disorder prediction 1 21 - -
Mch8g2499 647 SMART rav1_2 273 342 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2499 647 SMART rav1_2 372 436 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2499 647 MobiDBLite consensus disorder prediction 200 221 - -
Mch8g2499 647 PRINTS Ethylene responsive element binding protein signature 274 285 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2499 647 PRINTS Ethylene responsive element binding protein signature 412 432 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2499 647 CDD AP2 371 432 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2499 647 SUPERFAMILY DNA-binding domain 272 338 IPR016177 GO:0003677(InterPro)
Mch8g2499 647 MobiDBLite consensus disorder prediction 228 251 - -
Mch8g2499 647 ProSiteProfiles AP2/ERF domain profile. 273 336 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2499 647 FunFam AP2-like ethylene-responsive transcription factor ANT 272 338 - -
Mch8g2499 647 SUPERFAMILY DNA-binding domain 371 432 IPR016177 GO:0003677(InterPro)
Mch8g2499 647 Gene3D AP2/ERF domain 372 432 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2499 647 Gene3D AP2/ERF domain 273 338 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2499 647 Pfam AP2 domain 373 422 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2499 647 FunFam AP2-like ethylene-responsive transcription factor 371 432 - -
Mch8g2499 647 ProSiteProfiles AP2/ERF domain profile. 372 430 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2499 647 CDD AP2 272 338 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch8g2499 647 MobiDBLite consensus disorder prediction 1 28 - -
Mch8g2499 647 MobiDBLite consensus disorder prediction 172 263 - -
Mch8g2499 647 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 197 470 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0610 Mch-Chr10:4122428 Mch8g2499 Mch-Chr8:27903072 2.87E-115 dispersed
Mch2g0127 Mch-Chr2:962390 Mch8g2499 Mch-Chr8:27903072 2.00E-123 dispersed
Mch6g0520 Mch-Chr6:3525336 Mch8g2499 Mch-Chr8:27903072 2.61E-117 dispersed
Mch8g2499 Mch-Chr8:27903072 Mch9g0483 Mch-Chr9:3560491 8.54E-79 dispersed
Mch8g2499 Mch-Chr8:27903072 Mch8g1031 Mch-Chr8:7280075 7.47E-113 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43922 PF00847 AP2 3.40E-09 CL0081 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2499 K09285 - csv:101219473 823.157