Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2501 ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCACGACGACGACGACGAAGACAATGAGGACGCCTTCTACAGTGGCGGCGACGATGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGCGATTACGAGTTTATTGATAATGATTCCGACGATTCCGACGATATGGTCTCCTATCGGCACCAGCAAAACTATATAATCTTGGCTGAGGCAGATATACGGCAACGACAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCTATTTCAAAAGTTGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGAGCTGTTGGCTTACTAGAAAAACCAGTTCTGCAATCTTCAAATGAACTAGAACTACCTTGTGGTATATGTTTCGAAATTTATTCACGTGATAAGATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATACGTGTTGGACAGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGACGACAAAAAGAAATACTTCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGAAAGACCAAATGGTGCCCTGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAAATGGATACTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCAAAACCTTGTCCAAAATGCAAACGACCTATTGAGAAAAATCAAGGATGCATGCATATTACTTGCACACCACCCTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGGGAGATGGCCAAGAATTCTCTGGAGAGGTATACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCAGATCTCCATCAAATGCAAACTGTGCATCTGGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTTGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCGAAGAGACAGTTCTTTGAATATTTGCAAGGTGAGGCTGAATCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCAAGTTTACCTAAATGCCGATGGTCCTTCAAAAGATTTTAACGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAAAATCTAGTACGTGCTCTTGAGAATGGTCTGGCCGATGTGGACTCCCACGGTACCTGCAGCAGAACTGCGAGCTCAAAGAGTACTGGCAGCTGTAGGAGTAAAGGTGGTAAGGGCAAGATGAGCGCATTCCGAGCTAGTGGGTCAAGTCGGAATATTGATGATACCGACCATTGGTCTTGTGAACATTGCACCTTTGCAAACGTCAAGTCAGCTACCATCTGCCAGATGTGCCAGCAAAGGCGATAA 1785 44.09 MESEDELDMHDAHDDDDEDNEDAFYSGGDDDAAAIDSDDADVGDYEFIDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLEKPVLQSSNELELPCGICFEIYSRDKIQSAACGHPFCNTCWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLADVDSHGTCSRTASSKSTGSCRSKGGKGKMSAFRASGSSRNIDDTDHWSCEHCTFANVKSATICQMCQQRR 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27934760 27961251 + MC08g1970 Mch8g2501 696122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2501 594 SUPERFAMILY RING/U-box 141 222 - -
Mch8g2501 594 SUPERFAMILY RING/U-box 294 342 - -
Mch8g2501 594 SUPERFAMILY Ran binding protein zinc finger-like 567 594 IPR036443 -
Mch8g2501 594 SMART ibrneu5 213 275 IPR002867 GO:0008270(InterPro)
Mch8g2501 594 SMART ibrneu5 279 349 IPR002867 GO:0008270(InterPro)
Mch8g2501 594 Pfam IBR domain 297 337 - -
Mch8g2501 594 MobiDBLite consensus disorder prediction 1 54 - -
Mch8g2501 594 SUPERFAMILY RING/U-box 214 282 - -
Mch8g2501 594 MobiDBLite consensus disorder prediction 536 564 - -
Mch8g2501 594 Gene3D - 566 594 - -
Mch8g2501 594 FunFam RBR-type E3 ubiquitin transferase 276 526 - -
Mch8g2501 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 225 IPR013083 -
Mch8g2501 594 FunFam RBR-type E3 ubiquitin transferase 138 227 - -
Mch8g2501 594 CDD Rcat_RBR_ARI7-like 298 352 - -
Mch8g2501 594 CDD RING-HC_ARI6-like 141 202 - -
Mch8g2501 594 ProSiteProfiles Zinc finger RING-type profile. 144 188 IPR001841 -
Mch8g2501 594 Pfam Ariadne domain 362 543 IPR045840 -
Mch8g2501 594 Pfam IBR domain, a half RING-finger domain 213 275 IPR002867 GO:0008270(InterPro)
Mch8g2501 594 Gene3D - 271 526 - -
Mch8g2501 594 MobiDBLite consensus disorder prediction 1 56 - -
Mch8g2501 594 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 400 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Mch8g2501 594 SMART zf_4 569 593 IPR001876 -
Mch8g2501 594 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 77 116 IPR048962 -
Mch8g2501 594 ProSitePatterns Zinc finger RanBP2-type signature. 571 590 IPR001876 -
Mch8g2501 594 ProSiteProfiles Zinc finger RanBP2 type profile. 567 594 IPR001876 -
Mch8g2501 594 CDD BRcat_RBR_ANKIB1 220 284 - -
Mch8g2501 594 ProSiteProfiles TRIAD supradomain profile. 140 353 IPR044066 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2501 K11968 - - csv:101218052 1136.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1136 Mch-Chr2:7745680 Mch8g2501 Mch-Chr8:27934760 2.25E-56 dispersed
Mch7g0178 Mch-Chr7:2230566 Mch8g2501 Mch-Chr8:27934760 3.68e-319 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch2g1136 . 164 590 ARIADNE family AT4G34370 73.0 3.0e-185 644.8
Mch2g1136 . 58 542 ARIADNE family AT2G16090 77.4 7.5e-225 776.5
Mch2g1136 . 38 543 ARIADNE family AT3G27710 62.0 5.4e-184 641.0
Mch2g1136 . 44 523 ARIADNE family AT3G27720 54.3 8.5e-144 507.3
Mch8g2501 . 61 548 ARIADNE family AT1G05890 72.7 3.8e-223 771.2
Mch7g0178 . 127 626 ARIADNE family AT1G05890 69.0 2.3e-212 735.3
Mch8g2501 . 24 595 ARIADNE family AT1G65430 75.3 7.3e-264 906.4
Mch7g0178 . 110 679 ARIADNE family AT1G65430 68.9 1.1e-240 829.3
Mch8g2501 . 48 458 ARIADNE family AT2G31780 57.1 4.6e-149 524.6
Mch7g0178 . 112 545 ARIADNE family AT2G31780 54.5 3.6e-141 498.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72