Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2501 ATGGAATCGGAGGACGAGCTCGACATGCACGATGCCCACGACGACGACGACGAAGACAATGAGGACGCCTTCTACAGTGGCGGCGACGATGATGCTGCCGCCATCGACAGCGACGATGCTGATGTCGGCGATTACGAGTTTATTGATAATGATTCCGACGATTCCGACGATATGGTCTCCTATCGGCACCAGCAAAACTATATAATCTTGGCTGAGGCAGATATACGGCAACGACAGGAGGAAGACATCATGAGAGTATCCACTGTTCTTTCTATTTCAAAAGTTGCAGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTCCGTAGAGCTGTTGGCTTACTAGAAAAACCAGTTCTGCAATCTTCAAATGAACTAGAACTACCTTGTGGTATATGTTTCGAAATTTATTCACGTGATAAGATTCAGTCTGCTGCTTGTGGCCATCCATTTTGCAATACGTGTTGGACAGGTTATATTAGCACATCTATCAATGATGGTCCAGGATGTCTTATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTTGGTCAAGATATGATAAATTTATTAGCTTCTGATGACGACAAAAAGAAATACTTCCGCTATTTTGTTCGATCCTATGTTGAAGACAATAGAAAGACCAAATGGTGCCCTGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGGCACTGTAGCTAAATGGATACTGAAGAATAGTGCTGAGTCAGAAAATATGAACTGGATATTGGCAAATTCAAAACCTTGTCCAAAATGCAAACGACCTATTGAGAAAAATCAAGGATGCATGCATATTACTTGCACACCACCCTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGCAGGGAGATGGCCAAGAATTCTCTGGAGAGGTATACTCATTATTATGAAAGATGGGCTACCAACCAATCGTCTAGGCAAAAGGCACTTGCAGATCTCCATCAAATGCAAACTGTGCATCTGGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTTGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCGAAGAGACAGTTCTTTGAATATTTGCAAGGTGAGGCTGAATCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCAAGTTTACCTAAATGCCGATGGTCCTTCAAAAGATTTTAACGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAAAATCTAGTACGTGCTCTTGAGAATGGTCTGGCCGATGTGGACTCCCACGGTACCTGCAGCAGAACTGCGAGCTCAAAGAGTACTGGCAGCTGTAGGAGTAAAGGTGGTAAGGGCAAGATGAGCGCATTCCGAGCTAGTGGGTCAAGTCGGAATATTGATGATACCGACCATTGGTCTTGTGAACATTGCACCTTTGCAAACGTCAAGTCAGCTACCATCTGCCAGATGTGCCAGCAAAGGCGATAA 1785 44.09 MESEDELDMHDAHDDDDEDNEDAFYSGGDDDAAAIDSDDADVGDYEFIDNDSDDSDDMVSYRHQQNYIILAEADIRQRQEEDIMRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRAVGLLEKPVLQSSNELELPCGICFEIYSRDKIQSAACGHPFCNTCWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLASDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELQVYLNADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLADVDSHGTCSRTASSKSTGSCRSKGGKGKMSAFRASGSSRNIDDTDHWSCEHCTFANVKSATICQMCQQRR 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 27934760 27961251 + MC08g1970 Mch8g2501 696122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2501 594 SUPERFAMILY RING/U-box 141 222 - -
Mch8g2501 594 SUPERFAMILY RING/U-box 294 342 - -
Mch8g2501 594 SUPERFAMILY Ran binding protein zinc finger-like 567 594 IPR036443 -
Mch8g2501 594 SMART ibrneu5 213 275 IPR002867 GO:0008270(InterPro)
Mch8g2501 594 SMART ibrneu5 279 349 IPR002867 GO:0008270(InterPro)
Mch8g2501 594 Pfam IBR domain 297 337 - -
Mch8g2501 594 MobiDBLite consensus disorder prediction 1 54 - -
Mch8g2501 594 SUPERFAMILY RING/U-box 214 282 - -
Mch8g2501 594 MobiDBLite consensus disorder prediction 536 564 - -
Mch8g2501 594 Gene3D - 566 594 - -
Mch8g2501 594 FunFam RBR-type E3 ubiquitin transferase 276 526 - -
Mch8g2501 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 225 IPR013083 -
Mch8g2501 594 FunFam RBR-type E3 ubiquitin transferase 138 227 - -
Mch8g2501 594 CDD Rcat_RBR_ARI7-like 298 352 - -
Mch8g2501 594 CDD RING-HC_ARI6-like 141 202 - -
Mch8g2501 594 ProSiteProfiles Zinc finger RING-type profile. 144 188 IPR001841 -
Mch8g2501 594 Pfam Ariadne domain 362 543 IPR045840 -
Mch8g2501 594 Pfam IBR domain, a half RING-finger domain 213 275 IPR002867 GO:0008270(InterPro)
Mch8g2501 594 Gene3D - 271 526 - -
Mch8g2501 594 MobiDBLite consensus disorder prediction 1 56 - -
Mch8g2501 594 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 400 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Mch8g2501 594 SMART zf_4 569 593 IPR001876 -
Mch8g2501 594 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 77 116 IPR048962 -
Mch8g2501 594 ProSitePatterns Zinc finger RanBP2-type signature. 571 590 IPR001876 -
Mch8g2501 594 ProSiteProfiles Zinc finger RanBP2 type profile. 567 594 IPR001876 -
Mch8g2501 594 CDD BRcat_RBR_ANKIB1 220 284 - -
Mch8g2501 594 ProSiteProfiles TRIAD supradomain profile. 140 353 IPR044066 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1136 Mch-Chr2:7745680 Mch8g2501 Mch-Chr8:27934760 2.25E-56 dispersed
Mch7g0178 Mch-Chr7:2230566 Mch8g2501 Mch-Chr8:27934760 3.68e-319 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2501 K11968 - csv:101218052 1136.32