Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2525 ATGGCCACGCTTTCCTGCGAAGCATCCGATTTGGCAGGGCTGCTCCGGTCCACAGGCGCCGGGGCTGCGAATTCCAGCGCCGTGGCGTACTTCCTGTGCTCCAGATTCAACAGCATAGCCAGTAGCTTCAGCACCACGACCTACGCCCTCGATAACACCTACCTGTTGTTCTCGGCGTACCTCGTCTTCGCCATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGCGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCTGCCGCCGGTGGCCTCTCCTACTACCTCTTCGGCTTCGCCTTCGCCTTCGGTGCCCCCTCCAACCCCTTCGTCGGCCGCCACCTCTTCGGCCTCTCCGCCTTCCCCAACCCCTCCACCGACTACAGCTTCTTCCTCTTCCAGTGGGCCTTTGCTATTGCTGCTGCTGGAATCACAAGCGGCTCAATCGCCGAGCGGACCCGATTCGTAGCTTATCTAATTTACTCCACTGTCTTAACCGGCTTCGTCTACCCAATAGTTTCCCACTGGTTCTGGTCCGCCGATGGGTGGGCCAGCCCGACCCGACCCGACAACCGTCTCTTCGGATCCGGTGCCATAGACTTTGCCGGCTCCGGAGTGGTCCACATGGTGGGCGGCATAGCCGGGCTCTGGGGGGCGCTAATAGAAGGCCCACGAATCGGGCGGTTCGACCGGTCCGGCCGGTCCGTAGCACTACGTGGCCACAGCGCATCCCTAGTGGTGTTGGGTTCGTTTTTACTATGGTTCGGTTGGTACGGGTTCAACCCGGGTTCGTTTCTAACAATCTCGAGATCCTACAACGACGGCCGCCCATATTACGGGCAGTGGAGCGCCGTCGGGAGGACGGCGGTGACGACGACATTAGCCGGATGCACCGCCGCCTTAACCACGCTATTCAGCAAGCGTTTACTCGTCGGCCACTGGAACGTAACCGACGTGTGCAACGGTCTGCTCGGCGGGTTTGCGGCGGTGACGTCGGGGTGCGCGGTGGTGGAGCCGTGGGCGGCGGTGATCTGCGGGTTCGTGGCGGCGTGGGTGCTGATCGGGTGCAACAAGCTAGCCGAGAGGTTCAGCTACGACGACCCGTTGGAGGCGGCGCAGCTGCACGGGGGGTGCGGCGCGTGGGGGTTGGTATTCACGGGGCTGTTTGCAAGCGAGGCGTACGTGGCGGAGGTGTACGCGCCGGGCCGCGCGTACGGGTTGCTGATGGGTGGGGGAGGGCAGCTGTTGGCGGCGCAGGTGGTGGAGATAGCGGCGGTGGTGGGGTGGGTGACGGCGACGATGGGGCCACTGTTCTACGGGCTGCATAAGGCGAAGTTGCTGAGGGTGTCGAGGGATGATGAGATGGCGGGGATGGATTTGACACGTCATGGGGGGTTTGCGTACGTGTACAATGACGAGGAGGATCCGTCTGTAAAACCGGCGTCGTTTATGATGACGAGGATTGAGCCTACGGATGGGAGTCCCGCAGAGGATCATGGCCCCCCTTCGGCTCTAACGGCTGTGTGA 1545 62.46 MATLSCEASDLAGLLRSTGAGAANSSAVAYFLCSRFNSIASSFSTTTYALDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNPFVGRHLFGLSAFPNPSTDYSFFLFQWAFAIAAAGITSGSIAERTRFVAYLIYSTVLTGFVYPIVSHWFWSADGWASPTRPDNRLFGSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISRSYNDGRPYYGQWSAVGRTAVTTTLAGCTAALTTLFSKRLLVGHWNVTDVCNGLLGGFAAVTSGCAVVEPWAAVICGFVAAWVLIGCNKLAERFSYDDPLEAAQLHGGCGAWGLVFTGLFASEAYVAEVYAPGRAYGLLMGGGGQLLAAQVVEIAAVVGWVTATMGPLFYGLHKAKLLRVSRDDEMAGMDLTRHGGFAYVYNDEEDPSVKPASFMMTRIEPTDGSPAEDHGPPSALTAV 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28233111 28235418 + MC08g1990 Mch8g2525 696146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2525 514 MobiDBLite consensus disorder prediction 494 514 - -
Mch8g2525 514 ProSitePatterns Ammonium transporters signature. 206 231 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch8g2525 514 Pfam Ammonium Transporter Family 54 474 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch8g2525 514 FunFam Ammonium transporter 32 489 - -
Mch8g2525 514 SUPERFAMILY Ammonium transporter 48 455 - -
Mch8g2525 514 Gene3D Ammonium transporter AmtB like domains 32 491 IPR029020 -
Mch8g2525 514 NCBIfam ammonium transporter 51 474 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Mch8g2525 514 PANTHER AMMONIUM TRANSPORTER 22 481 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch6g2311 Mch-Chr6:25075392 Mch8g2525 Mch-Chr8:28233111 1.09E-250 dispersed
Mch7g0891 Mch-Chr7:13469856 Mch8g2525 Mch-Chr8:28233111 2.25E-249 dispersed
Mch8g2525 Mch-Chr8:28233111 Mch5g0143 Mch-Chr5:943775 6.43E-256 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2525 K03320 - csv:101222356 826.624