Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2549 ATGGGGACAGAGCTTATAAGGGTTTGCGTTGAAGAAGATAGTGATGACTTTCCATCAGTTCCACCAGGTTTTGAGTCATATATATCATTTTCTCGGGAGAAGGTGCATAATCATGAAAAACAAGATAATCATGTCCCTGTTAGTTTGCCAACATCTGTCTCTGAATCACAATCAGTTAAAATGGAAACTGAGGCAGAAGTTGCCGATGTTGCAAAAGTAACGAGGTCCCTCCGGCGTAAACCATGTATAAACTATAGACAATATGATTACTGCTATGATGACGTGATTGTTACCGAGTGTCTTGATCAGGGTATTTCTTTAAAGCCTTCCCTTTCAAAGGGAGTCATCCGTGGATGTCCACAGTGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCATCCAGAAGAGTCGTGCCGGCCAGACCTTGAGGATGCTCCTGTGTTTTACCCAACTGAAGAGGAGTTCGAAGATACTTTGACATATATAGCAAGCATACGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCACCTTCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGAGTTCTAAATTTGCAACTCGTGTCCAAAGGATTGACAAGCTTCAGAATCGAGATTCAATAAGAAAGATGTCTAGGGTCTGCAATCAAATGAGGAGGAAAAGGAGGAGAGGCAATCGAAAGGGGGTTGATGTTACCCCTTTAAATGGAAAAAGTGGAGATGCCGGGTCTTATGAGGCAGAAAGATTTGGATTTGATCCTGGCCCTGATTTTACTTTAGCATCGTTTGAAAAATATGCGAATGACTTTAAGTCTCAATATTTTAGTAAAGCACTCAATGATACTGCAAAGGGATGTAATTCGTCCATGCTGCAAGAGAACGAACACTGGAAACCATCAGTGGAAAATATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTGCTATATGGGGCTGATTTGGAAACTGGAGAGTTTGGTAGCGGTTTTTCAAAGAGTTGCTGTCAAGATGGCTCTACATCAGATGAAGATAAGTATGTAAAATCTGGCTGGAACCTGAACAACTTTCCCAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGTAGTAATATATCTGGAGTCTTGGTACCATGGCTTTATATTGGGATGTGCTTTTCGTCCTTTTGCTGGCATGTGGAAGATCACCACCTCTACTCTCTGAACTATATGCACTGGGGAGATCCTAAAGTCTGGTATGGTGTTCCAGGAAATGATGCTGGTAAATTAGAGGAGGCTATGAGAAAGCGTTTACCCGACCTCTTTGAAGAACAACCTGATTTGCTTCATAAGCTGGCAAGTACACAGCTTTCTCCGTCCATACTGAAATCCGAGGGTGTACCTGTATATAGATGTATTCAGAATCCCGGAGAGTTTGTATTAACCTTCCCTCGAGCATACCATGCAGGATTCAACAGTGGTTTCAATTGTGCTGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATTGTGAGCAGGGACGAAGAACTACTATTTCCCATGATAAACTATTGCTTGGTGCTGCGAGGGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAGAAAAACACTGCGGATAACTTAAGATGGAATAGTGTTTGTGGAAAAGATGGAGTCCTAGCAAAAGCATTCAAGAGGCGTGTTGAGATGGAGTGTGCTAGGAGGAACTTGCCTTGTAGTTCTTCTCAGGCAGTGAAGATGGAGAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTAGGGTGTCGTTGTTCCCCAGATAAATTTGTGTGCTTGAATCATGCAAAGCAGCTGTGTTCTTGTGCTTGGGGAGAGAGGTTTTTTCTATTTCGCTATGACGTTGGTGAATTAAACATGCTTCTTGAAGCATTGGAGGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTTTGGCGCTCAGTTCTTGCATTTCCAAAGAAAAGATGCATGGAGGTAAAGTGACTCCTTCGTCTGAAGGAGCAGTATCTACAGAGTTCAGTTCACAATTATCAACTAAGTCTTCTGGGAATCCTCAGTGGAAAGAATTCTTGAGACAATCCCCATTACTGTCAACTTTGACCTCTATTAATAGCCTGTCTCAACATAGCAAAAGGTTATCTGAAGTTACCGCTTTTCTAGAAGATAAGAAGTTAGTGGATAAGAAGGTAGTTTCTACACTTAAAGGATCTGGGATGGAAGTTGAGCAGCAAAATCATAAATCTCAGGTGAAAAGAGAAAACTACGATTTCGTGACAACCAGTTCAGGGCTTGCAGGTTTGCAGTTCTCTGAGGAGGATAAAAAAGCTCTGAATTTGGTTAAAGTAAAAAACAAAATGGATAAAACGTGTCCTGAAAATGTCATTCTACTAAGTGATGATGAAGGTGATGGGCCAAAGAAGACAATTTCAAATGGTTTAGCGGAAAGTTCATTAGTAAAGCATTTGAAAACTTCAGATAGGTTCACAGATGTTGATTCTAAGGCTAGCCTGTGCAACCACAATGAAAATGCAATCTTGCACACCCCGGCGACTGATGCAACCACTATGGGAGAAAAGGAGGACAACTTGTTGACTGAAAGAAAATTAAGAAAATTGAGTAATTGCCAATCGAGCATCGTACCTACAAATAGTAAACATTCTCAAAATACTAACTTATTGGTCAGAAGTGCAGTGAGTGCTATTCAGAACAACAATTTTTCAGAAGCAGGATTAGGACCTAGTGTTAAAGTATTTCCAGTTCCAACAGATACCGATTCTCAAAAACCACAGGCATGTGGCTCTGGAAAACCGAATGAGGATAAGCATGGAAATGTGGGAACAAGTGCTACCTCATATTTGTCAGACACTAATAGAACTGCTTCTGGAAGTTTATCTTGCAATCAACCTAATGTCGATAGATTCTTGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTACGGAGAATCAACTGTAATGTAGAACCTTTAGAATTTGGAGTTGTGCTTTCAGGAAAGTCTTGGTCGAACAGCCAGGCCATTTTCCCAAAAGGATTTAAGAGCAGGGTCAAGTATATAAATGTTTCAGATCCGACAACTTTTTGTTACTATGTTTCTGAAATTCTTGATGCAGGACGAGAAGCACCACTTTTCATGGTTTTTTTGGAGGATTGTCCAAGCGAGGTATTCATTCATGTTTCTGCTGCCAGATGCTGGGAGTTGGTTAGAGACCGAGTGAATCAGGAAATCGCGAAGCAACATAAATTGGGGAAAACAAATCTTCCTCCTCTACAGCCTCCTGGGAGTTTAGATGGATTTGAAATGTTCGGATTTACGTCCCCGGCAATTGTGCAGGCTATTGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGACCCCAAGTGCAGAGTCCACAACATTCTCAGCCAACCGAAATTAGTCGAAACTTGCAAACAACTGAAAGGAACGACGGGGTCGATCCTAGGCCTGGTGGAGTTGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTTGATGAACTAAACTCGCTCCATACTCTCTTAAATGATAATAGGCCAACAGTTGACCAAGGCGAGCTGACTCGACTTCTCAACGAAGAGATTCTAAGTCATCGAAGATGA 3798 42.07 MGTELIRVCVEEDSDDFPSVPPGFESYISFSREKVHNHEKQDNHVPVSLPTSVSESQSVKMETEAEVADVAKVTRSLRRKPCINYRQYDYCYDDVIVTECLDQGISLKPSLSKGVIRGCPQCNNCQKVVARWHPEESCRPDLEDAPVFYPTEEEFEDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFATRVQRIDKLQNRDSIRKMSRVCNQMRRKRRRGNRKGVDVTPLNGKSGDAGSYEAERFGFDPGPDFTLASFEKYANDFKSQYFSKALNDTAKGCNSSMLQENEHWKPSVENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFSKSCCQDGSTSDEDKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNDAGKLEEAMRKRLPDLFEEQPDLLHKLASTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHAGFNSGFNCAEAVNVAPVDWLPHGQIAVELYCEQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTADNLRWNSVCGKDGVLAKAFKRRVEMECARRNLPCSSSQAVKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKFVCLNHAKQLCSCAWGERFFLFRYDVGELNMLLEALEGKLSAVYRWARQDLGLALSSCISKEKMHGGKVTPSSEGAVSTEFSSQLSTKSSGNPQWKEFLRQSPLLSTLTSINSLSQHSKRLSEVTAFLEDKKLVDKKVVSTLKGSGMEVEQQNHKSQVKRENYDFVTTSSGLAGLQFSEEDKKALNLVKVKNKMDKTCPENVILLSDDEGDGPKKTISNGLAESSLVKHLKTSDRFTDVDSKASLCNHNENAILHTPATDATTMGEKEDNLLTERKLRKLSNCQSSIVPTNSKHSQNTNLLVRSAVSAIQNNNFSEAGLGPSVKVFPVPTDTDSQKPQACGSGKPNEDKHGNVGTSATSYLSDTNRTASGSLSCNQPNVDRFLRQKGPRMAKVVRRINCNVEPLEFGVVLSGKSWSNSQAIFPKGFKSRVKYINVSDPTTFCYYVSEILDAGREAPLFMVFLEDCPSEVFIHVSAARCWELVRDRVNQEIAKQHKLGKTNLPPLQPPGSLDGFEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPQVQSPQHSQPTEISRNLQTTERNDGVDPRPGGVDIVLRGLLKKANLDELNSLHTLLNDNRPTVDQGELTRLLNEEILSHRR 1265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28597260 28610063 + MC08g2011 Mch8g2549 696170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2549 1265 Pfam C5HC2 zinc finger 616 666 IPR004198 -
Mch8g2549 1265 ProSiteProfiles FYR domain FYRC motif profile. 1089 1179 IPR003889 GO:0005634(InterPro)
Mch8g2549 1265 MobiDBLite consensus disorder prediction 1181 1207 - -
Mch8g2549 1265 Pfam F/Y-rich N-terminus 1041 1086 IPR003888 GO:0005634(InterPro)
Mch8g2549 1265 ProSiteProfiles JmjN domain profile. 145 186 IPR003349 -
Mch8g2549 1265 SMART JmjN_1 144 185 IPR003349 -
Mch8g2549 1265 SMART cupin_9 359 526 IPR003347 -
Mch8g2549 1265 MobiDBLite consensus disorder prediction 226 246 - -
Mch8g2549 1265 PANTHER LYSINE-SPECIFIC DEMETHYLASE 129 1023 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Mch8g2549 1265 MobiDBLite consensus disorder prediction 966 991 - -
Mch8g2549 1265 Pfam jmjN domain 146 179 IPR003349 -
Mch8g2549 1265 ProSiteProfiles FYR domain FYRN motif profile. 1029 1087 IPR003888 GO:0005634(InterPro)
Mch8g2549 1265 Gene3D - 1036 1173 - -
Mch8g2549 1265 ProSiteProfiles JmjC domain profile. 359 526 IPR003347 -
Mch8g2549 1265 Gene3D Cupin 130 510 - -
Mch8g2549 1265 FunFam Putative lysine-specific demethylase JMJ16 1035 1173 - -
Mch8g2549 1265 SMART fyrn_3 1043 1087 IPR003888 GO:0005634(InterPro)
Mch8g2549 1265 SMART fyrc_3 1093 1187 IPR003889 GO:0005634(InterPro)
Mch8g2549 1265 SUPERFAMILY Clavaminate synthase-like 360 553 - -
Mch8g2549 1265 MobiDBLite consensus disorder prediction 1181 1214 - -
Mch8g2549 1265 Pfam F/Y rich C-terminus 1092 1175 IPR003889 GO:0005634(InterPro)
Mch8g2549 1265 Pfam JmjC domain, hydroxylase 392 509 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2549 K11446 - - csv:101208186 2041.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1686 Mch-Chr10:16913882 Mch8g2549 Mch-Chr8:28597260 5.01E-57 dispersed
Mch3g0867 Mch-Chr3:12655058 Mch8g2549 Mch-Chr8:28597260 4.58E-270 dispersed
Mch4g2044 Mch-Chr4:22694153 Mch8g2549 Mch-Chr8:28597260 2.19E-41 dispersed
Mch6g2386 Mch-Chr6:25741416 Mch8g2549 Mch-Chr8:28597260 6.54E-99 dispersed
Mch8g2549 Mch-Chr8:28597260 Mch9g0980 Mch-Chr9:8207727 6.18E-208 dispersed
Mch8g2549 Mch-Chr8:28597260 Mch6g2206 Mch-Chr6:24321382 2.10E-57 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2549 . 1 1264 JUMONJI Transcription Factor Family AT1G08620 54.0 0.0e+00 1279.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43930 PF02373 JmjC 1.20E-43 CL0029 Mch TR