Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2549 ATGGGGACAGAGCTTATAAGGGTTTGCGTTGAAGAAGATAGTGATGACTTTCCATCAGTTCCACCAGGTTTTGAGTCATATATATCATTTTCTCGGGAGAAGGTGCATAATCATGAAAAACAAGATAATCATGTCCCTGTTAGTTTGCCAACATCTGTCTCTGAATCACAATCAGTTAAAATGGAAACTGAGGCAGAAGTTGCCGATGTTGCAAAAGTAACGAGGTCCCTCCGGCGTAAACCATGTATAAACTATAGACAATATGATTACTGCTATGATGACGTGATTGTTACCGAGTGTCTTGATCAGGGTATTTCTTTAAAGCCTTCCCTTTCAAAGGGAGTCATCCGTGGATGTCCACAGTGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCATCCAGAAGAGTCGTGCCGGCCAGACCTTGAGGATGCTCCTGTGTTTTACCCAACTGAAGAGGAGTTCGAAGATACTTTGACATATATAGCAAGCATACGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTCCCACCTTCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGAGTTCTAAATTTGCAACTCGTGTCCAAAGGATTGACAAGCTTCAGAATCGAGATTCAATAAGAAAGATGTCTAGGGTCTGCAATCAAATGAGGAGGAAAAGGAGGAGAGGCAATCGAAAGGGGGTTGATGTTACCCCTTTAAATGGAAAAAGTGGAGATGCCGGGTCTTATGAGGCAGAAAGATTTGGATTTGATCCTGGCCCTGATTTTACTTTAGCATCGTTTGAAAAATATGCGAATGACTTTAAGTCTCAATATTTTAGTAAAGCACTCAATGATACTGCAAAGGGATGTAATTCGTCCATGCTGCAAGAGAACGAACACTGGAAACCATCAGTGGAAAATATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTGCTATATGGGGCTGATTTGGAAACTGGAGAGTTTGGTAGCGGTTTTTCAAAGAGTTGCTGTCAAGATGGCTCTACATCAGATGAAGATAAGTATGTAAAATCTGGCTGGAACCTGAACAACTTTCCCAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGTAGTAATATATCTGGAGTCTTGGTACCATGGCTTTATATTGGGATGTGCTTTTCGTCCTTTTGCTGGCATGTGGAAGATCACCACCTCTACTCTCTGAACTATATGCACTGGGGAGATCCTAAAGTCTGGTATGGTGTTCCAGGAAATGATGCTGGTAAATTAGAGGAGGCTATGAGAAAGCGTTTACCCGACCTCTTTGAAGAACAACCTGATTTGCTTCATAAGCTGGCAAGTACACAGCTTTCTCCGTCCATACTGAAATCCGAGGGTGTACCTGTATATAGATGTATTCAGAATCCCGGAGAGTTTGTATTAACCTTCCCTCGAGCATACCATGCAGGATTCAACAGTGGTTTCAATTGTGCTGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATTGTGAGCAGGGACGAAGAACTACTATTTCCCATGATAAACTATTGCTTGGTGCTGCGAGGGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAGAAAAACACTGCGGATAACTTAAGATGGAATAGTGTTTGTGGAAAAGATGGAGTCCTAGCAAAAGCATTCAAGAGGCGTGTTGAGATGGAGTGTGCTAGGAGGAACTTGCCTTGTAGTTCTTCTCAGGCAGTGAAGATGGAGAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTAGGGTGTCGTTGTTCCCCAGATAAATTTGTGTGCTTGAATCATGCAAAGCAGCTGTGTTCTTGTGCTTGGGGAGAGAGGTTTTTTCTATTTCGCTATGACGTTGGTGAATTAAACATGCTTCTTGAAGCATTGGAGGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTTTGGCGCTCAGTTCTTGCATTTCCAAAGAAAAGATGCATGGAGGTAAAGTGACTCCTTCGTCTGAAGGAGCAGTATCTACAGAGTTCAGTTCACAATTATCAACTAAGTCTTCTGGGAATCCTCAGTGGAAAGAATTCTTGAGACAATCCCCATTACTGTCAACTTTGACCTCTATTAATAGCCTGTCTCAACATAGCAAAAGGTTATCTGAAGTTACCGCTTTTCTAGAAGATAAGAAGTTAGTGGATAAGAAGGTAGTTTCTACACTTAAAGGATCTGGGATGGAAGTTGAGCAGCAAAATCATAAATCTCAGGTGAAAAGAGAAAACTACGATTTCGTGACAACCAGTTCAGGGCTTGCAGGTTTGCAGTTCTCTGAGGAGGATAAAAAAGCTCTGAATTTGGTTAAAGTAAAAAACAAAATGGATAAAACGTGTCCTGAAAATGTCATTCTACTAAGTGATGATGAAGGTGATGGGCCAAAGAAGACAATTTCAAATGGTTTAGCGGAAAGTTCATTAGTAAAGCATTTGAAAACTTCAGATAGGTTCACAGATGTTGATTCTAAGGCTAGCCTGTGCAACCACAATGAAAATGCAATCTTGCACACCCCGGCGACTGATGCAACCACTATGGGAGAAAAGGAGGACAACTTGTTGACTGAAAGAAAATTAAGAAAATTGAGTAATTGCCAATCGAGCATCGTACCTACAAATAGTAAACATTCTCAAAATACTAACTTATTGGTCAGAAGTGCAGTGAGTGCTATTCAGAACAACAATTTTTCAGAAGCAGGATTAGGACCTAGTGTTAAAGTATTTCCAGTTCCAACAGATACCGATTCTCAAAAACCACAGGCATGTGGCTCTGGAAAACCGAATGAGGATAAGCATGGAAATGTGGGAACAAGTGCTACCTCATATTTGTCAGACACTAATAGAACTGCTTCTGGAAGTTTATCTTGCAATCAACCTAATGTCGATAGATTCTTGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTACGGAGAATCAACTGTAATGTAGAACCTTTAGAATTTGGAGTTGTGCTTTCAGGAAAGTCTTGGTCGAACAGCCAGGCCATTTTCCCAAAAGGATTTAAGAGCAGGGTCAAGTATATAAATGTTTCAGATCCGACAACTTTTTGTTACTATGTTTCTGAAATTCTTGATGCAGGACGAGAAGCACCACTTTTCATGGTTTTTTTGGAGGATTGTCCAAGCGAGGTATTCATTCATGTTTCTGCTGCCAGATGCTGGGAGTTGGTTAGAGACCGAGTGAATCAGGAAATCGCGAAGCAACATAAATTGGGGAAAACAAATCTTCCTCCTCTACAGCCTCCTGGGAGTTTAGATGGATTTGAAATGTTCGGATTTACGTCCCCGGCAATTGTGCAGGCTATTGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGACCCCAAGTGCAGAGTCCACAACATTCTCAGCCAACCGAAATTAGTCGAAACTTGCAAACAACTGAAAGGAACGACGGGGTCGATCCTAGGCCTGGTGGAGTTGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTTGATGAACTAAACTCGCTCCATACTCTCTTAAATGATAATAGGCCAACAGTTGACCAAGGCGAGCTGACTCGACTTCTCAACGAAGAGATTCTAAGTCATCGAAGATGA 3798 42.07 MGTELIRVCVEEDSDDFPSVPPGFESYISFSREKVHNHEKQDNHVPVSLPTSVSESQSVKMETEAEVADVAKVTRSLRRKPCINYRQYDYCYDDVIVTECLDQGISLKPSLSKGVIRGCPQCNNCQKVVARWHPEESCRPDLEDAPVFYPTEEEFEDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWESSKFATRVQRIDKLQNRDSIRKMSRVCNQMRRKRRRGNRKGVDVTPLNGKSGDAGSYEAERFGFDPGPDFTLASFEKYANDFKSQYFSKALNDTAKGCNSSMLQENEHWKPSVENIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFSKSCCQDGSTSDEDKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNDAGKLEEAMRKRLPDLFEEQPDLLHKLASTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHAGFNSGFNCAEAVNVAPVDWLPHGQIAVELYCEQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTADNLRWNSVCGKDGVLAKAFKRRVEMECARRNLPCSSSQAVKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKFVCLNHAKQLCSCAWGERFFLFRYDVGELNMLLEALEGKLSAVYRWARQDLGLALSSCISKEKMHGGKVTPSSEGAVSTEFSSQLSTKSSGNPQWKEFLRQSPLLSTLTSINSLSQHSKRLSEVTAFLEDKKLVDKKVVSTLKGSGMEVEQQNHKSQVKRENYDFVTTSSGLAGLQFSEEDKKALNLVKVKNKMDKTCPENVILLSDDEGDGPKKTISNGLAESSLVKHLKTSDRFTDVDSKASLCNHNENAILHTPATDATTMGEKEDNLLTERKLRKLSNCQSSIVPTNSKHSQNTNLLVRSAVSAIQNNNFSEAGLGPSVKVFPVPTDTDSQKPQACGSGKPNEDKHGNVGTSATSYLSDTNRTASGSLSCNQPNVDRFLRQKGPRMAKVVRRINCNVEPLEFGVVLSGKSWSNSQAIFPKGFKSRVKYINVSDPTTFCYYVSEILDAGREAPLFMVFLEDCPSEVFIHVSAARCWELVRDRVNQEIAKQHKLGKTNLPPLQPPGSLDGFEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPQVQSPQHSQPTEISRNLQTTERNDGVDPRPGGVDIVLRGLLKKANLDELNSLHTLLNDNRPTVDQGELTRLLNEEILSHRR 1265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28597260 28610063 + MC08g2011 Mch8g2549 696170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2549 1265 Pfam C5HC2 zinc finger 616 666 IPR004198 -
Mch8g2549 1265 ProSiteProfiles FYR domain FYRC motif profile. 1089 1179 IPR003889 GO:0005634(InterPro)
Mch8g2549 1265 MobiDBLite consensus disorder prediction 1181 1207 - -
Mch8g2549 1265 Pfam F/Y-rich N-terminus 1041 1086 IPR003888 GO:0005634(InterPro)
Mch8g2549 1265 ProSiteProfiles JmjN domain profile. 145 186 IPR003349 -
Mch8g2549 1265 SMART JmjN_1 144 185 IPR003349 -
Mch8g2549 1265 SMART cupin_9 359 526 IPR003347 -
Mch8g2549 1265 MobiDBLite consensus disorder prediction 226 246 - -
Mch8g2549 1265 PANTHER LYSINE-SPECIFIC DEMETHYLASE 129 1023 - GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER)
Mch8g2549 1265 MobiDBLite consensus disorder prediction 966 991 - -
Mch8g2549 1265 Pfam jmjN domain 146 179 IPR003349 -
Mch8g2549 1265 ProSiteProfiles FYR domain FYRN motif profile. 1029 1087 IPR003888 GO:0005634(InterPro)
Mch8g2549 1265 Gene3D - 1036 1173 - -
Mch8g2549 1265 ProSiteProfiles JmjC domain profile. 359 526 IPR003347 -
Mch8g2549 1265 Gene3D Cupin 130 510 - -
Mch8g2549 1265 FunFam Putative lysine-specific demethylase JMJ16 1035 1173 - -
Mch8g2549 1265 SMART fyrn_3 1043 1087 IPR003888 GO:0005634(InterPro)
Mch8g2549 1265 SMART fyrc_3 1093 1187 IPR003889 GO:0005634(InterPro)
Mch8g2549 1265 SUPERFAMILY Clavaminate synthase-like 360 553 - -
Mch8g2549 1265 MobiDBLite consensus disorder prediction 1181 1214 - -
Mch8g2549 1265 Pfam F/Y rich C-terminus 1092 1175 IPR003889 GO:0005634(InterPro)
Mch8g2549 1265 Pfam JmjC domain, hydroxylase 392 509 IPR003347 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1686 Mch-Chr10:16913882 Mch8g2549 Mch-Chr8:28597260 5.01E-57 dispersed
Mch3g0867 Mch-Chr3:12655058 Mch8g2549 Mch-Chr8:28597260 4.58E-270 dispersed
Mch4g2044 Mch-Chr4:22694153 Mch8g2549 Mch-Chr8:28597260 2.19E-41 dispersed
Mch6g2386 Mch-Chr6:25741416 Mch8g2549 Mch-Chr8:28597260 6.54E-99 dispersed
Mch8g2549 Mch-Chr8:28597260 Mch9g0980 Mch-Chr9:8207727 6.18E-208 dispersed
Mch8g2549 Mch-Chr8:28597260 Mch6g2206 Mch-Chr6:24321382 2.10E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43930 PF02373 JmjC 1.20E-43 CL0029 Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2549 K11446 - csv:101208186 2041.16