Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2579 ATGGCATCGAGCTCGTCGAATTCGCCGTGCGCAGCCTGCAAATTTCTCCGGCGAAAATGTCAACCGGAATGCGTTTTCGCACCGTACTTTCCGCCGGACCAGCCGCAGAAATTCGCGAATGTTCACAAGGTGTTCGGCGCCAGCAATGTGACGAAACTCCTCAACGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCCCTCGCCTACGAAGCCGATATGCGCCTCCGTGATCCCGTCTACGGCTGCGTCGGCGTAATCTCCCTCCTCCAGCACCAGCTCTGTAAACTCCAAATGGACCTCACCTGCGCTAAATCGGAACTCTCCAAATACCAAAACCTAGGCATCGGGAACCACGCCGCCCTCATATCTCCGCCTTCCGCCGCCGTCGCCACCGCTCACGGCCCGCGCAGCAACCAGCCGGCCTTCAATTTTGTTAGGGATCAACCACATAGCCTCTATCACGATCAAATTTTCCCACGAGATCAACAACAACAGATGATGATCCGAAGTGGCTTCGACGGCGGCAGCAACTACGACGCCGGATTATTGGCCGTCAACGTCACCCCCAGCATCGCCAACCTCGGCCACCAGTTCCAGCAACCTCGAGCCGCCGCCGGAGTCGATCGCCGCGGTACTCTCGATCATTCT 654 57.34 MASSSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSAAVATAHGPRSNQPAFNFVRDQPHSLYHDQIFPRDQQQQMMIRSGFDGGSNYDAGLLAVNVTPSIANLGHQFQQPRAAAGVDRRGTLDHS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28931017 28931670 - MC08g2038 Mch8g2579 696200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2579 218 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Mch8g2579 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 143 - -
Mch8g2579 218 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1427 Mch-Chr2:10525986 Mch8g2579 Mch-Chr8:28931017 3.67E-58 dispersed
Mch3g1425 Mch-Chr3:16660368 Mch8g2579 Mch-Chr8:28931017 3.64E-52 dispersed
Mch4g2198 Mch-Chr4:23699283 Mch8g2579 Mch-Chr8:28931017 5.53E-54 dispersed
Mch4g2472 Mch-Chr4:25556187 Mch8g2579 Mch-Chr8:28931017 1.20E-44 dispersed
Mch4g2495 Mch-Chr4:25700778 Mch8g2579 Mch-Chr8:28931017 9.31E-45 dispersed
Mch8g0569 Mch-Chr8:4057664 Mch8g2579 Mch-Chr8:28931017 2.61E-23 dispersed
Mch8g1482 Mch-Chr8:11184109 Mch8g2579 Mch-Chr8:28931017 2.03E-58 dispersed
Mch8g2579 Mch-Chr8:28931017 Mch9g1398 Mch-Chr9:16416749 4.83E-43 dispersed
Mch8g2579 Mch-Chr8:28931017 Mch6g0126 Mch-Chr6:743224 2.31E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43931 PF03195 LOB 4.10E-43 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2579 - - - 0.0