Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2596 GGTGGAATGGAGAAGAAGCTCATAAACCCGGAGTTATGGCAAGCGTGCGCCGGACCACTGGTCAACCTGCCGCCGGCTGGTTACCACGTGGTGTATTTTCCCCAAGGCCACAGCGAACAGGTTGCAGCATCTTTGAAGAAAGATGTGGATGCTCAAATCCCAAATTACCCAAATCTTCCTTCAAAGTTACTGTGTCTGCTTCATAATGCTGACCCAGAAACAGATGAAGTTTATGCTCAAATGACACTACAACCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCTGATCTATCTCTCAAGTCTAATAAGCCACAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGCGGGTTCTCTGTGCCTCGCCGTGCTGCAGAGAAGATTTTCCCCCCTCTTGATTTCTCTATGCAACCACCTGCACAAGAGCTTGTTGCCAAGGATTTGCATGATACTGTATGGAATTTTCGTCACATATATCGAGGACAACCGAAACGTCATTTGCTGACAACGGGTTGGAGCCTATTTGTTAGTGGAAAAAGACTTCTTGCTGGTGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTTTTGGGCATAAGGCGCGCGAACAGGCAACCAACGAACTTATCATCATCGGTGTTGTCGACTGATAGTATGCACATTGGTATTCTTGCAGCTGCTGCCCATGCCGCCGCAAACAATAGCCCTTTCACCGTCTTCTACAACCCAAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATACTACAAGGCAGTGTCTGCAAACCAAATATCGCTCGGTATGCGCTTTAGGATGATGTTTGAGACAGAAGAGTCTGGAACAAGAAGGTACATGGGTACTATCACAGGTATAAGTGATCTTGATCCCGTCAGATGGAAGGGCTCGCAATGGCGTAATCTACAGGTCGGGTGGGATGAGTCAACTGGAGGAGAAAGACGTAACCGAGTCTCGATATGGGAGATCGAACCGGTAATTGCTCCATTTTTCATTTGTCCCCCTCCGTTCTTGAGATCGAAGCGTCCAAGGCAACCGGGAATGCCAGATGACGACTCCTCTGATTTGGATGGTATTTTTAAAAGAACAATGTTTGGTGATGATTTCTGCATGAAAGATCCACAGGGATATCCTGGCCTGAACTTAGTTCAATGGATGAATATGCAAAACCCTTCGCTGTCTAACTCGATGCAGCCAAATTATATGCAATCATTTTCCGGGTCAATGCTACAAAACCTTGGTGGAGTCGATATTTCTCGGCAACTTGGCTTGTCAGCGACGCAAATTCCTCAATCGAACAACATACAGTTCAATGCTCAAAGGCTACTTTCTCAAGCTCAACAGTTAGATCAGCTGCCTAAGCTACCATCGAATATGAGCTCATTGGTGGCTGAACAATTGGATGATATGTCCCAGCAGACACGGCAGAATTTGATTAACCAAAACGCAGTCTCGAGTCAGATTCAAGCTCAAATTATGCAGCAGCCTCATGGGAATGGGATCCTTCAGCAACCAAACTCTTTGCAAAATCAGCAGCTTCAGAGAAGCCTCCCTCAGAACCTGCAGATGCAGCAGCAGCATCAGCATCAGCAAATTTTGGGTCAGAATCAACAGCAGAATGTGAATCCGTCCCCGCTCCCGGAACAGTTAAATAATCAGCTGCAAATGTCAGATAATCAGGTTCAAATTCAGATGCTGCAGAAGCTCCAGCAGCAGCAGCAATCACTTTTGGCTCAGCAGTCTGCTCTTCAGCCTGTTCAACTCGCGCAACTTCCAGAACAGCAGAGACCGTTGATAGATGTGTCCCAAAGCTATTCCAGATCCATGTCATCGAACCAAATGCTTGAAATGGCTCAGACTACCCCCATTGTGGTCCCTCCCTCGAATACATTACCGCAGCAGGCAGCGAAAAGCAATAGCCAGACGAATAGCCGATTCTCGAATCAGCATTTGCAGCCGAAACTCCCACAACTACAGCAACCACCTCCATCTACTGTAATTACTGACATGTCTAGGCAGATGGGTCTTCCTCCAAGCCAAACAAACAATCAGCTCTCTGCAGCTACGAGTAGTGTAATAACTGGAGCAGCTGGAGCTGGCCAATCCGGAATTACTGACGACATACCATCATGCTCCACATCACCATCCACAAACAACTGTCCAAGTTTGATTCAACCAGTAACGAACGGAAGGGTTCATCGGAGCACAGGATTGGTTGAGGATGTGGCTCAATCTGCTGCAACTATATTCAGTCCAAATGCCTTGGATAATACCATGTCTCCAAATGCCAACTTGGTTAAAGATTTTCCACAGAAGACTGCTGTTAAACCTTCACTGAATATTTCCAAGAATCAAAGCCATGGAATTTTTGCACAACAAACTTTCTTGGGCGGCGCGGTTGCTCAGACAGATTTCTTGGACACGTCGTCCTCCACAACCTCGGCTTGCCTTTCTCAGAATGATGCTCAACTGCAGCAGCAAAATAATATGATGTCATTCAACTCGCAACCGATGTTGTTTAGAGATAGTACTCAGGATTTGGAAGTAGCAGCAGATCTCCATAACATTCCGTATGAGGCTAACGTCGATGGACAATTGGTAGCGCAGTTAAATTCCGATCCTTTGTTAAACAACAAGGGTATTGGAGGATTGGGGAAGGATTTCTCCAATAATTTTTCTTCTGGGGGCATGCTCACCACTTATGACGTACAGAAAGATCCTCAGCAGGAAATTTCTTCCTCTTTAGTTTCTCAGTCATTCGGTATTCCAGACATGACATTTAATTCCATGGATTCGACGATAAACGATAATGCCTTCTTGAACAGAAATCAATGGGCTCCTCCGCCTCCGTTTCAGCGTATGCGAACCTACACCAAGGTGTACAAACGTGGAGCTGTTGGGAGATCTATCGATATCACCCGTTACTCGGGTTATGATGAGCTGAAACAAGACCTTGCCCGTAGGTTCGGTATCGAGGGGCAGTTGGAGGACAGGCAAAAAATAGGCTGGAAACTTGTTTATGTGGATCATGAGAATGATGTTTTACTTGTAGGCGATGACCCTTGGGACGACTTTGTGAACTGTGTACGGAGCATCAAGATCCTGTCCCCACAGGAAGTGCAGCAAATGAGCTTGGATGACGATTTTGGAAATGGGGTCCTACCGAACCAAGCCTGCAGCAGCTCGGATGGTGGGAATGCTTGA 3255 46.14 GGMEKKLINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNADPETDEVYAQMTLQPVPSFDKDALLRSDLSLKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDTVWNFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSTDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPPPFLRSKRPRQPGMPDDDSSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMQSFSGSMLQNLGGVDISRQLGLSATQIPQSNNIQFNAQRLLSQAQQLDQLPKLPSNMSSLVAEQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHGNGILQQPNSLQNQQLQRSLPQNLQMQQQHQHQQILGQNQQQNVNPSPLPEQLNNQLQMSDNQVQIQMLQKLQQQQQSLLAQQSALQPVQLAQLPEQQRPLIDVSQSYSRSMSSNQMLEMAQTTPIVVPPSNTLPQQAAKSNSQTNSRFSNQHLQPKLPQLQQPPPSTVITDMSRQMGLPPSQTNNQLSAATSSVITGAAGAGQSGITDDIPSCSTSPSTNNCPSLIQPVTNGRVHRSTGLVEDVAQSAATIFSPNALDNTMSPNANLVKDFPQKTAVKPSLNISKNQSHGIFAQQTFLGGAVAQTDFLDTSSSTTSACLSQNDAQLQQQNNMMSFNSQPMLFRDSTQDLEVAADLHNIPYEANVDGQLVAQLNSDPLLNNKGIGGLGKDFSNNFSSGGMLTTYDVQKDPQQEISSSLVSQSFGIPDMTFNSMDSTINDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWDDFVNCVRSIKILSPQEVQQMSLDDDFGNGVLPNQACSSSDGGNA 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29101355 29107691 - MC08g2054 Mch8g2596 696217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2596 1084 SUPERFAMILY DNA-binding pseudobarrel domain 102 240 IPR015300 -
Mch8g2596 1084 CDD B3_DNA 110 202 IPR003340 GO:0003677(InterPro)
Mch8g2596 1084 FunFam Auxin response factor 967 1061 - -
Mch8g2596 1084 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 1063 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch8g2596 1084 SUPERFAMILY CAD & PB1 domains 985 1051 - -
Mch8g2596 1084 FunFam Auxin response factor 275 346 - -
Mch8g2596 1084 Pfam Auxin response factor 237 320 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch8g2596 1084 Pfam B3 DNA binding domain 111 213 IPR003340 GO:0003677(InterPro)
Mch8g2596 1084 FunFam Auxin response factor 109 213 - -
Mch8g2596 1084 MobiDBLite consensus disorder prediction 644 702 - -
Mch8g2596 1084 Pfam AUX/IAA family 970 1057 IPR033389 -
Mch8g2596 1084 ProSiteProfiles B3 DNA-binding domain profile. 111 213 IPR003340 GO:0003677(InterPro)
Mch8g2596 1084 Gene3D - 275 345 - -
Mch8g2596 1084 SMART B3_2 111 213 IPR003340 GO:0003677(InterPro)
Mch8g2596 1084 Gene3D - 968 1061 - -
Mch8g2596 1084 MobiDBLite consensus disorder prediction 535 567 - -
Mch8g2596 1084 ProSiteProfiles PB1 domain profile. 972 1057 IPR053793 -
Mch8g2596 1084 Gene3D - 109 212 IPR015300 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1648 Mch-Chr4:19671306 Mch8g2596 Mch-Chr8:29101355 1.05E-181 dispersed
Mch6g2320 Mch-Chr6:25135217 Mch8g2596 Mch-Chr8:29101355 4.18E-103 dispersed
Mch8g2596 Mch-Chr8:29101355 Mch8g3259 Mch-Chr8:34534366 5.21E-286 dispersed
Mch8g2596 Mch-Chr8:29101355 Mch1g2064 Mch-Chr1:20009579 1.72E-191 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43933 PF02309 AUX_IAA 4.90E-07 CL0072 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2596 - - - 0.0