Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2611 ATGGAGAACATTATCGACGAGTACAAATACTATTGGGAAACCAACATGTTTCTGCACAACGAAGAGTTCGACGGGTGGCCGGGCCTGGACGAAGCGTTCTACGGCTCCTACGACTCGAGCTCGCCGGACGGAACGCCGTCGTCTTTGGAAGCCTCAAAGAACATCTTATCGGAGAGGAATCGGAGGAAGAAGCTCAACGATCGCCTTCTCGCGCTCAGAGCCGTCGTCCCTAATATCACCAAGATGGACAAGGCGTCGATAATCAAAGACGCGATAGAGTACATCCAAAAGCTGCGAGAGCAGGAGAGGAGAATCGAATCAGACATCTCGGATCTGGAATCGGGAAAAGTGAAGAGAACTCCGGCGAGCGATTCCGGCGACGATCAGATTTCGGCGAAGAAGACAGCGGATGCGAATCGAGAGCCGAAAGGTGATTCCGAGGGCGATGCGTCGTCGTCTTCAACAATCGAAATTCTCGATCTTAGTGTGAACTACATGGCGGAGAAGACGATCATTGTGAGTTTGACTTGCAGACGGAGCGGCGACACCATATTGAAGCTCAGCCAAGCAATCGAATCGCTCAACCTCAAAATTATTACCGCTAATATCACCGTCGTCGCCGGTAGGCTCTTGAATACTCTATTTGTTGAGGCAGAGAGAGCAGAGGAAGAGGAAGTAAAGGTAAAAGTAGAAACAGCAATAGCAGCAATTTGTGATCGCAAAAGCCCTATGAGCATTTGA 741 49.93 MENIIDEYKYYWETNMFLHNEEFDGWPGLDEAFYGSYDSSSPDGTPSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQKLREQERRIESDISDLESGKVKRTPASDSGDDQISAKKTADANREPKGDSEGDASSSSTIEILDLSVNYMAEKTIIVSLTCRRSGDTILKLSQAIESLNLKIITANITVVAGRLLNTLFVEAERAEEEEVKVKVETAIAAICDRKSPMSI 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29319891 29324751 - MC08g2066 Mch8g2611 696232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2611 246 MobiDBLite consensus disorder prediction 109 152 - -
Mch8g2611 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 98 IPR011598 GO:0046983(InterPro)
Mch8g2611 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 113 IPR036638 GO:0046983(InterPro)
Mch8g2611 246 Pfam Helix-loop-helix DNA-binding domain 55 99 IPR011598 GO:0046983(InterPro)
Mch8g2611 246 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 49 227 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Mch8g2611 246 SMART finulus 55 104 IPR011598 GO:0046983(InterPro)
Mch8g2611 246 MobiDBLite consensus disorder prediction 109 123 - -
Mch8g2611 246 MobiDBLite consensus disorder prediction 130 147 - -
Mch8g2611 246 Coils Coil 88 115 - -
Mch8g2611 246 Gene3D - 47 115 IPR036638 GO:0046983(InterPro)
Mch8g2611 246 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 46 117 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0296 Mch-Chr8:2051861 Mch8g2611 Mch-Chr8:29319891 1.47E-10 dispersed
Mch8g2611 Mch-Chr8:29319891 Mch9g2245 Mch-Chr9:22852426 4.39E-17 dispersed
Mch6g0493 Mch-Chr6:3265113 Mch8g2611 Mch-Chr8:29319891 5.63E-75 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43934 PF00010 HLH 1.10E-10 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2611 - - - 0.0