Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2630 ATGTTGACAGTGAAAGCTCTAAATGAAGCAAGATTGGAGGCAAACGTAAAATTACATGGGAAGGGAATTAGCCAGAAGAAATGGCCAAGTCCTTTTGCAATAGCTAGTGGGTTGCTTCTAACGGCGTCGTTTTTGAAGTACGTGTACCACCCATTGCGGTGGCTGGCCATCGGCGCCGTGGCCGCCGGCATCTCTCCGATTCTCCTAAAAGCCATCGCCGCCGTTCGCCACCTTAGAATTGATGTCAACATTCTTGCAATTATTGCTGTTGTAGGGACAATTGCTATGAATGACTATATGGAAGCTGGGAGCATTGTGTTCTTGTTTTCCATTGCTGAATGGCTGGAGTCAAGAGCAAGCCAAAAGGCAAGTTCTGCAATGTGCTCACTTATGAGCCTAGCCCCTCGAAAGGCAGTGATTGCAGAGAGTGGAGAGGTTGTGGATGCAAAAGAGGTAAAATTGAAGAGTGTATTGGCTGTGAAGGCAGGAGAAGTCATTCCCATTGATGGCATTGTTGTGGAAGGAAATTGTGAAGTTGATGAGAAAACATTGACTGGAGAAACTTTCCCAGTTCCCAAACACAAACATTCTCTTGTTTGGGCTGGTACTATCAACTTGAATGGTTACATTAGTGTTGAAACTAGTGTTGTAGCTGAGGATTGTGTGGTGGCAAAAATGGCTGAGCTTGTCGAAGAAGCTCAAAATAGCAAATCCAAAACCCAGAGATTCATTGATGAATGTGCCAAATATTACACTCCAGCTGTTGTTGTCATATCAGCTTGTGTTGCAGCCATTCCAGCTGCATTAAGAGTTCACAACCTCAGCCATTGGCTTCACTTAGCTCTGGTGGTTTTGGTGAGTGCATGTCCCTGTGCCCTAATCCTCTCCACCCCGGTCGCCGCCTTCTGCGCCCTCACGAAGGCCGCCACGGCTGGAGTTCTCATCAAAGGCGGCGACCACCTTGAAATTCTTGCCAAGATCAAGGTCATGGCCTTCGACAAAACGGGGACTATTACTAGAGGTGAATTTGTTGTCACCGATTTTCGAGCTCTTCGGGACGATATTAGCTTGCACACCTTGCTTCATTGGGTTTCATGCATTGAGAGCAAATCCAGCCATCCCATGGCAGCTGCACTTGTCAACCATGGAAGGTTGCTTTCCGTCCATATAAATCCCGAAAACGTCGAGGAATTTGAGAACTTTCCAGGAGAAGGTGTTCGTGGAAAGATAGATGGAAATGATATCTACATTGGAAGTAGAAAGATTGCTGCCAGAGCTGGCTGCACAACAGTTCCGAGCTTAGACGATGAAACGAAACAAGGGCTGACTGTCGGATATATATTCCGTGGGGCGACCATAGCTGGATCCTTCAGCCTTTCGGATGCTTGTCGTTCGGGAGTTAGAGAGGCGATCAAGGAGATTAAGAGTTTTGGTATAAAAACAGCTATGCTCACTGGAGATTGTAGTGCAGCAGCCGCACATGCCCAAGAACAGCTCGGGGATGTGCTCGACGTAATCCATTCCGAACTTCTACCTAAGGAGAAGGCAAATATCATAAAAGAACTCAAAAGGGATGGACCAACCGCCATGGTTGGAGATGGCTTAAACGACACCCCAGCATTAGCCACAGCTGATATTGGCATATCAATGGGTGTTTCAGGTTCAGCACTGGCCACTGAAACTGGGAATGTGATCCTAATGTCAAATGACATGAGAAAAATTCCAAAAGCCATCAAACTAGCAAAGAAATCTCATGCTAAAGTAGTTCAAAATGTAATTCTCTCGATCGGCACGAAGACTGCGATCCTCGCCTTGGCATTTGCCGGGCATCCGCTCGTCTGGGCGGCCGTGCTTGCTGATGTCGGTACATGTGTGGTGGTTATTTTAAACAGCATGCTCCTTTTGAGAGGAGCTGATCGCCACACAAATGTGAATAAATGTTGCAAATCTGCCAAACCATGTTCGACAAAACATGGACGATCGTCTCATCATCATGATCATCGTCACCACCATAATCACCGATGCCATGTCGTTGACGATAAATCAACCTGTCGTCTCGAGAATCATGTCCATAAGCATTGTTGTTCTGAGAAAATTAAGGCTCATAAGCTTCATCTTGATCCTCATGAAAATAGAATTCAAGGTGATCAATCATGTGAGGAAGAACACAATGGAAGTAATGGAAATTCTTCTAGGAAAGTGAGTGAATCAAATTGTAATTGCCACTCACATCATATTTCTATTGACATTCATGAAGGTCTCGTTATCTTTGTGGATAGAGATAAAAGATCCTATCCCACCTTATTCTCTTATTCGGAAGAACTTTGA 2328 45.36 MLTVKALNEARLEANVKLHGKGISQKKWPSPFAIASGLLLTASFLKYVYHPLRWLAIGAVAAGISPILLKAIAAVRHLRIDVNILAIIAVVGTIAMNDYMEAGSIVFLFSIAEWLESRASQKASSAMCSLMSLAPRKAVIAESGEVVDAKEVKLKSVLAVKAGEVIPIDGIVVEGNCEVDEKTLTGETFPVPKHKHSLVWAGTINLNGYISVETSVVAEDCVVAKMAELVEEAQNSKSKTQRFIDECAKYYTPAVVVISACVAAIPAALRVHNLSHWLHLALVVLVSACPCALILSTPVAAFCALTKAATAGVLIKGGDHLEILAKIKVMAFDKTGTITRGEFVVTDFRALRDDISLHTLLHWVSCIESKSSHPMAAALVNHGRLLSVHINPENVEEFENFPGEGVRGKIDGNDIYIGSRKIAARAGCTTVPSLDDETKQGLTVGYIFRGATIAGSFSLSDACRSGVREAIKEIKSFGIKTAMLTGDCSAAAAHAQEQLGDVLDVIHSELLPKEKANIIKELKRDGPTAMVGDGLNDTPALATADIGISMGVSGSALATETGNVILMSNDMRKIPKAIKLAKKSHAKVVQNVILSIGTKTAILALAFAGHPLVWAAVLADVGTCVVVILNSMLLLRGADRHTNVNKCCKSAKPCSTKHGRSSHHHDHRHHHNHRCHVVDDKSTCRLENHVHKHCCSEKIKAHKLHLDPHENRIQGDQSCEEEHNGSNGNSSRKVSESNCNCHSHHISIDIHEGLVIFVDRDKRSYPTLFSYSEEL 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29545688 29551279 - MC08g_new0552 Mch8g2630 696251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2630 775 CDD P-type_ATPase_HM 32 633 - -
Mch8g2630 775 FunFam Putative cadmium/zinc-transporting ATPase 3 342 463 - -
Mch8g2630 775 SUPERFAMILY Calcium ATPase, transmembrane domain M 83 756 IPR023298 -
Mch8g2630 775 Gene3D - 119 234 - -
Mch8g2630 775 PRINTS Copper-transporting ATPase signature 566 580 - -
Mch8g2630 775 PRINTS Copper-transporting ATPase signature 509 526 - -
Mch8g2630 775 PRINTS Copper-transporting ATPase signature 122 140 - -
Mch8g2630 775 Gene3D - 324 582 IPR023214 -
Mch8g2630 775 SFLD p-type atpase 313 583 IPR044492 -
Mch8g2630 775 ProSitePatterns E1-E2 ATPases phosphorylation site. 333 339 IPR018303 -
Mch8g2630 775 SUPERFAMILY HAD-like 330 632 IPR036412 -
Mch8g2630 775 SUPERFAMILY Calcium ATPase, transduction domain A 145 230 IPR008250 -
Mch8g2630 775 FunFam Copper-transporting ATPase 1, putative 120 234 - -
Mch8g2630 775 Pfam E1-E2 ATPase 134 310 - -
Mch8g2630 775 PRINTS P-type cation-transporting ATPase superfamily signature 477 487 - -
Mch8g2630 775 PRINTS P-type cation-transporting ATPase superfamily signature 555 567 - -
Mch8g2630 775 PRINTS P-type cation-transporting ATPase superfamily signature 531 550 - -
Mch8g2630 775 PRINTS P-type cation-transporting ATPase superfamily signature 331 345 - -
Mch8g2630 775 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Mch8g2630 775 Pfam haloacid dehalogenase-like hydrolase 327 545 - -
Mch8g2630 775 SFLD C1.7: P-type atpase like 313 583 - -
Mch8g2630 775 NCBIfam cadmium family heavy metal-translocating P-type ATPase 82 636 - -
Mch8g2630 775 Gene3D - 342 463 IPR023299 GO:0000166(InterPro)
Mch8g2630 775 NCBIfam heavy metal translocating P-type ATPase 82 634 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
Mch8g2630 775 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 4 730 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
Mch8g2630 775 NCBIfam HAD-IC family P-type ATPase 105 609 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g1310 Mch-Chr2:9270897 Mch8g2630 Mch-Chr8:29545688 2.66E-72 dispersed
Mch6g2674 Mch-Chr6:28440276 Mch8g2630 Mch-Chr8:29545688 1.32E-70 dispersed
Mch2g1625 Mch-Chr2:13514422 Mch8g2630 Mch-Chr8:29545688 4.19E-53 transposed
Mch6g0507 Mch-Chr6:3382907 Mch8g2630 Mch-Chr8:29545688 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2630 K01534 - csv:101203668 1136.71