Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch8g2640 | ATGGGAAACGACACCGCTTTAACTCTCGAGGAGATCAAGAACGAGACCGTTGATCTGGAGAAAATTCCTATTGAAGAAGTGTTTGAGCAGCTGAAATGTACAAGGGAAGGTTTAAGTTCTCAAGAGGGGGAGAACCGTCTTCAAATCTTTGGCCCCAACAAGCTAGAAGAGAAAAAGGAAAGCAAGATTCTGAAGTTTCTTGGGTTTATGTGGAATCCCCTCTCATGGGTCATGGAAGCTGCAGCTATCATGGCCATTGCCCTGGCCAACGGCGGCGGTAAGGGCCCGGATTGGCAGGATTTTGTCGGTATCGTCTGTCTGCTGGTTATCAACTCCACCATCAGTTTCATTGAAGAGAACAATGCTGGTAATGCAGCAGCTGCTCTTATGGCTGGTCTTGCTCCTAAAACTAAGGTTCTGAGGGATGGAAAATGGTGTGAACAAGATGCAGCAATTCTGGTTCCTGGAGATGTGATCAGTGTGAAATTGGGAGACATCATCCCGGCCGATGCTCGTCTTCTCGAGGGTGATCCGTTAAAGGTCGATCAATCTGCCTTGACTGGAGAATCACTTCCTGTGACCAAGCATCCTGGGGATGAAGTCTTCTCAGGCTCAACTTGCAAACAAGGAGAAATTGAAGCTGTTGTTATTGCCACTGGTGTCCACACCTTCTTTGGAAAGGCAGCTCATCTTGTTGACAGCACCAACCAAGTTGGTCACTTCCAGAAGGTTCTCACTGCCATTGGGAACTTCTGTATTTGCTCCATTGCCATTGGTATGCTGATTGAGATCATCGTCATGTACCCGATCCAACACCGTGCCTACAGAGACGGAATCGACAATCTTTTGGTTCTCTTGATTGGAGGCATTCCAATTGCTATGCCCACTGTCTTGTCTGTGACAATGGCCATTGGTTCTCACAAGCTGTCCCAACAGGGTGCTATCACCAAGAGAATGACTGCCATCGAAGAAATGGCCGGTATGGACGTTCTCTGCAGCGACAAGACTGGAACACTGACTCTCAACAAGCTGAGTGTTGACAAGAACTTGATTGAAGTATTTATCAAGGGCGTAGACAAAGAGCATGTCATTCTTCTTGCTGCACGGGCCTCTAGGACAGAAAACCAAGATGCCATTGATGCTGCCATGGTTGGAATGCTCGCAGACCCGAAAGAGGCAAGAGCTGGAATTAGAGAAGTTCACTTCTTGCCATTCAACCCTGTGGATAAGAGAACTGCCTTGACTTACATTGATTCAAACGGTAACTGGCACCGTGCTAGCAAAGGTGCTCCCGAGCAGATCTTGGATCTTTGCAACTGCAGAGAGGACTTTAAGAGGAAGGTGTTTTCTGTGATTGACAAGTTTGCGGAGCGTGGGCTTCGATCGTTGGCTGTTGCTAGACAGGAAGTGCCTGAAAAGACTAAGGAGAGTTCTGGTGCTCCCTGGCAATTCGTTGGTTTGTTGCCCCTTTTTGATCCTCCTAGACACGACAGTGCCGAAACCATTCGCAGGGCTCTCAATTTGGGAGTGAATGTCAAGATGATTACCGGTGATCAACTTGCCATCGGAAAGGAAACTGGTCGAAGACTTGGAATGGGAACAAATATGTATCCGTCTTCTTCTTTACTCGGCCAGCACAAGGATGAAAGCATAGCTGGCCTTCCTGTTGAAGAGTTGATTGAGAAGGCTGATGGATTCGCCGGAGTGTTTCCAGGTGAACTTTGTCTCCTGTTAATCCTTAATACAAATCACAAGATGTTTACACCCCATTTTTCGGTTTCAATTCTCTTTTCTCTTATGATGCAATGTTTAGAACACAAATACGAAATCGTAAAGAAGTTGCAAGAGAGGAAGCACATTTGTGGAATGACAGGAGATGGTGTGAACGATGCCCCTGCTTTAAAGAAGGCCGACATTGGTATTGCTGTTGCTGATGCTACAGATGCTGCACGAGGCGCATCGGACATTGTTCTTACAGAGCCTGGATTGAGTGTTATCATTAGTGCCGTCTTGACTAGCAGAGCAATTTTCCAAAGAATGAAGAACTATACCATTTATGCAGTCTCCATCACAATTCGTATTGTGTTTGGTTTCATGTTCATTGCCCTCATTTGGAAGTTCGATTTCTCACCCTTCATGGTTTTGATTATCGCCATCCTGAATGACGGTACAATTATGACAATTTCAAAGGACAGGGTGAAGCCATCTCCATTACCTGACAGTTGGAAACTAAAGGAGATTTTTGCGACCGGGGTAGTACTCGGAGGGTACTTGGCATTGATGACGGTTATATTCTTTTGGTTAATGGATGGAACAAACTTCTTCTCCGACAAATTTGGTGTAAGATCCATCCGTCATAGTGAATATGAAATGATGGCTGCTTTATACCTCCAAGTGAGTATTGTCAGCCAGGCTTTGATTTTTGTAACTCGATCGCGTAGCTGGTCGTATGTTGAGCGCCCTGGACTTTTGTTGGTGGGCGCTTTCTTGATTGCACAATTGGTTGCAACTTTGATCGCGGTGTATGCTAACTGGGGTTTCGCAAAGATCAAGGGAATCGGATGGGGATGGGCCGGTGTCATCTGGCTTTACAGCATTGTGTTCTATATCCCACTCGATATCATGAAGTTCGCCATTCGGTACATCTTGAGCGGAAAGGCATGGCTCAACTTGTTGGAGAACAAGACTGCTTTCACCACCAAGAAAGACTATGGAAAAGAGGAGAGGGAAGCTCAATGGGCTCTTGCTCAAAGGACATTACATGGACTTCAACCTCCCGAATCGACGAACATCTTCTCCGAAAAGAGCAGCTACAGAGAACTCTCTGAGATCGCAGAGCAAGCTAAGAGACGTGCCGAGATTGCAAGGCTCCGAGAGCTCAACACACTCAAGGGTCACGTCGAGTCCGTCGTGAAGTTGAAGGGACTCGACATCGACACAATCCAGCAGCACTACACAGTGTGA | 2964 | 46.56 | MGNDTALTLEEIKNETVDLEKIPIEEVFEQLKCTREGLSSQEGENRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGKGPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWCEQDAAILVPGDVISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMLIEIIVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFIKGVDKEHVILLAARASRTENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSNGNWHRASKGAPEQILDLCNCREDFKRKVFSVIDKFAERGLRSLAVARQEVPEKTKESSGAPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQHKDESIAGLPVEELIEKADGFAGVFPGELCLLLILNTNHKMFTPHFSVSILFSLMMQCLEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLALMTVIFFWLMDGTNFFSDKFGVRSIRHSEYEMMAALYLQVSIVSQALIFVTRSRSWSYVERPGLLLVGAFLIAQLVATLIAVYANWGFAKIKGIGWGWAGVIWLYSIVFYIPLDIMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPESTNIFSEKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV | 987 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 29630087 | 29636644 | - | MC08g2087 | Mch8g2640 | 696261 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch8g2640 | 987 | SUPERFAMILY | HAD-like | 328 | 671 | IPR036412 | - | |
| Mch8g2640 | 987 | Gene3D | - | 346 | 491 | IPR023299 | GO:0000166(InterPro) | |
| Mch8g2640 | 987 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 37 | 571 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Mch8g2640 | 987 | SMART | Cation_ATPase_N_a_2 | 18 | 90 | IPR004014 | - | |
| Mch8g2640 | 987 | FunFam | ATPase 4 plasma membrane-type | 601 | 851 | - | - | |
| Mch8g2640 | 987 | Gene3D | - | 217 | 345 | - | - | |
| Mch8g2640 | 987 | CDD | P-type_ATPase_H | 37 | 877 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Mch8g2640 | 987 | Gene3D | - | 140 | 216 | - | - | |
| Mch8g2640 | 987 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 20 | 911 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Mch8g2640 | 987 | NCBIfam | HAD-IC family P-type ATPase | 605 | 713 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g2640 | 987 | NCBIfam | HAD-IC family P-type ATPase | 104 | 351 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g2640 | 987 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 334 | 340 | IPR018303 | - | |
| Mch8g2640 | 987 | FunFam | ATPase 2, plasma membrane-type | 485 | 586 | - | - | |
| Mch8g2640 | 987 | SUPERFAMILY | Calcium ATPase, transduction domain A | 135 | 232 | IPR008250 | - | |
| Mch8g2640 | 987 | FunFam | Plasma membrane ATPase | 344 | 491 | - | - | |
| Mch8g2640 | 987 | FunFam | Plasma membrane ATPase | 597 | 672 | - | - | |
| Mch8g2640 | 987 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 18 | 883 | IPR023298 | - | |
| Mch8g2640 | 987 | PRINTS | H+-transporting ATPase (proton pump) signature | 448 | 466 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g2640 | 987 | PRINTS | H+-transporting ATPase (proton pump) signature | 563 | 579 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g2640 | 987 | PRINTS | H+-transporting ATPase (proton pump) signature | 796 | 817 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g2640 | 987 | Gene3D | - | 936 | 987 | - | - | |
| Mch8g2640 | 987 | SFLD | C1.7: P-type atpase like | 314 | 675 | - | - | |
| Mch8g2640 | 987 | Coils | Coil | 938 | 958 | - | - | |
| Mch8g2640 | 987 | PRINTS | P-type cation-transporting ATPase superfamily signature | 624 | 643 | - | - | |
| Mch8g2640 | 987 | PRINTS | P-type cation-transporting ATPase superfamily signature | 486 | 497 | - | - | |
| Mch8g2640 | 987 | PRINTS | P-type cation-transporting ATPase superfamily signature | 647 | 659 | - | - | |
| Mch8g2640 | 987 | PRINTS | P-type cation-transporting ATPase superfamily signature | 182 | 196 | - | - | |
| Mch8g2640 | 987 | PRINTS | P-type cation-transporting ATPase superfamily signature | 332 | 346 | - | - | |
| Mch8g2640 | 987 | PRINTS | P-type cation-transporting ATPase superfamily signature | 508 | 518 | - | - | |
| Mch8g2640 | 987 | SFLD | p-type atpase | 314 | 675 | IPR044492 | - | |
| Mch8g2640 | 987 | Pfam | Cation transporter/ATPase, N-terminus | 21 | 84 | IPR004014 | - | |
| Mch8g2640 | 987 | Pfam | E1-E2 ATPase | 134 | 311 | - | - | |
| Mch8g2640 | 987 | Gene3D | - | 69 | 139 | - | - | |
| Mch8g2640 | 987 | Gene3D | - | 592 | 882 | - | - | |
| Mch8g2640 | 987 | FunFam | Plasma membrane ATPase | 135 | 219 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch11g0624 | Mch-Chr11:4012489 | Mch8g2640 | Mch-Chr8:29630087 | 0 | dispersed | |
| Mch8g0384 | Mch-Chr8:2734768 | Mch8g2640 | Mch-Chr8:29630087 | 0 | dispersed | |
| Mch8g1083 | Mch-Chr8:7660825 | Mch8g2640 | Mch-Chr8:29630087 | 0 | dispersed | |
| Mch8g2640 | Mch-Chr8:29630087 | Mch8g3015 | Mch-Chr8:32754980 | 0 | dispersed | |
| Mch6g0513 | Mch-Chr6:3459876 | Mch8g2640 | Mch-Chr8:29630087 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch8g2640 | K01535 | - | csv:101221564 | 1778.07 |