Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2685 ATGGATTCCCAAATTCCGACCGGCGACGACTTCATTTTCCGATCAAAACTCCCGGACATTTACATCCCCGACCACCTCCCTCTCCACACCTACTGCTTCGACCGCCTCTCCCAATTCCAACACCGCCCATGCCTCATCAACGCTGCCACCGGCCACGTCCACACCTACGCCGCCGTCCACCTCACCGCCCGCCGCGTTGCCGCCGGCCTCGCCAACATCGGCATCAGCCAAGGCGACGTCATCATGATCCTCCTCCAGAACAGCCCCGAGTTCGTTTTCGCCTTCCTCGGCGCCTCCTACGGCGGGGCCATCAGCACCACCGCCAACCCGCTGTACAAGCCGGCGGAGATCGCGAAGCAGGCCAGGGCCGCCAACGCTAAGGTTATAATTACTCAGTCCGCGTTCGTGGACAAGATTAAGGGCTTCGCGGAGGAACGCGGCGTCAAAATTTTGTGCACCGATTCGCCGCCGGACGGTTGCCTGAGCTTCTCGGAGCTGACGGAGGCGGACGAAAACGACATTCCGGCTGTGAAGATCAACTCGAACGACGTGGTTGCGCTGCCGTACTCCTCCGGCACCACCGGAATTCCTAAAGGCGTTATGCTTACGCATAAATCTCTCGTCACCAGCGTCGCCCAGCAGGTGGACGGAGAGAATCCGAATCTATATTTCAAGAGTAAGGACGTGATCCTGTGCATTCTGCCGTTGTTCCACATCTACTCTCTAAACTCCGTTCTGCTCTGCGGACTACGTGTCGGCGCAGCCATTCTCATCATTCAGAAATACGACATGTCGTCCCTCCTCCACCTCATCCAGGCCCACAAGGCCACCGTGGCCCCCTTCGTCCCTCCCATCGTCTTGGACCTCGCCAAGAATCCGGACATCCACCGTTACGACTTGTCGTCCATAAGAATCGTCATGTCGGGCGCCGCACCCCTCGGCAAGGACCTCGAGGACACGCTCAAGGCCAGACTCCCCAACGCCAACCTTGGACAGGGATATGGAATGACGGAGGCAGGGCCAGTGCTATCGATGTCTTTAACATTTGCGAAAGAACCTATGGCGGTGAAATCAGGTGCGTGTGGGACTGTGGTAAGAAATGCGGAGATGAAGATTATCCACCCTCAAACCGGTGCCTCTTTGCCACGTAATCAACCTGGCGAGATCTGCATACGTGGCTCCCAGATCATGAAAGGCAAGTACCTTAACAACAAAGAAGCCACGGAGGAGACGATAGACAAAGATGGGTGGCTCCACACAGGCGACTTAGGGTTCATCGACGACGACGACGAGATCTTCATCGTCGATCGGCTGAAGGAACTGATCAAATACAAAGGGTACCAAGTAGCCCCAGCTGAGCTTGAAGCTCTCTTGACTTCAAACCCTAACATTGCTGCTGCTGCTGTTATACCTATGAAAGATGAAGCTGCGGGAGAGATCCCTGTTGCATTTGTTGTTAGATCTGGAGGTTCCAAGATTAGTGAGGATGAAATCAAAGAGTATGTTTCAGAGCAGGTGATATTTTACAAAAAGATCAGAAAGGTATTCTTGGTGGACTCAATTCCAATTGCTCCTTCAGGCAAGATTTTGAGGAAAGTTTTAAGGGATCAGTTGCAGGCTGGTGCCTTCTGA 1632 54.35 MDSQIPTGDDFIFRSKLPDIYIPDHLPLHTYCFDRLSQFQHRPCLINAATGHVHTYAAVHLTARRVAAGLANIGISQGDVIMILLQNSPEFVFAFLGASYGGAISTTANPLYKPAEIAKQARAANAKVIITQSAFVDKIKGFAEERGVKILCTDSPPDGCLSFSELTEADENDIPAVKINSNDVVALPYSSGTTGIPKGVMLTHKSLVTSVAQQVDGENPNLYFKSKDVILCILPLFHIYSLNSVLLCGLRVGAAILIIQKYDMSSLLHLIQAHKATVAPFVPPIVLDLAKNPDIHRYDLSSIRIVMSGAAPLGKDLEDTLKARLPNANLGQGYGMTEAGPVLSMSLTFAKEPMAVKSGACGTVVRNAEMKIIHPQTGASLPRNQPGEICIRGSQIMKGKYLNNKEATEETIDKDGWLHTGDLGFIDDDDEIFIVDRLKELIKYKGYQVAPAELEALLTSNPNIAAAAVIPMKDEAAGEIPVAFVVRSGGSKISEDEIKEYVSEQVIFYKKIRKVFLVDSIPIAPSGKILRKVLRDQLQAGAF 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30119516 30124562 - MC08g2118 Mch8g2685 696306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2685 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 439 - -
Mch8g2685 543 Pfam AMP-binding enzyme 35 399 IPR000873 -
Mch8g2685 543 Pfam AMP-binding enzyme C-terminal domain 453 528 IPR025110 -
Mch8g2685 543 Gene3D - 5 438 IPR042099 -
Mch8g2685 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 535 - GO:0016405(PANTHER)
Mch8g2685 543 CDD 4CL 22 534 - -
Mch8g2685 543 Gene3D - 439 541 IPR045851 -
Mch8g2685 543 SUPERFAMILY Acetyl-CoA synthetase-like 15 540 - -
Mch8g2685 543 FunFam 4-coumarate--CoA ligase 2 440 541 - -
Mch8g2685 543 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1049 Mch-Chr8:7367318 Mch8g2685 Mch-Chr8:30119516 5.67E-271 dispersed
Mch8g2685 Mch-Chr8:30119516 Mch9g0492 Mch-Chr9:3635471 9.34E-264 dispersed
Mch6g0535 Mch-Chr6:3624512 Mch8g2685 Mch-Chr8:30119516 1.93E-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2685 K01904 - csv:101210868 872.848