Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2727 ATGTTTGATTGTGGTTACAAGTCACAACTGATGGGTGGTCAGCGAGAAAAGTTTGTGAGGTTGGATGACTTGGACTCTAGATTGTCATCCCCTTCTGATGGTGGAATGAGAAGATGTGGTTTTAATATAGATGGATTTAACCGTGCAGTTCATGGAAATGATAAGCCATCTGGATCGTTTAAGAGAGGAATGAGAAAAGGGTCCGAAGGACTTAAATCAATTGGTCGATCACTCAAGTTTGGGGTTTCTCGAGCTGTATTTCCCGAGGATCTTAAAGAGTCAAAGAAGAAGATATTTGATCCTCAAGACAAATTGCTCTTATTTTTGAATAAACTCTTTGTCATATCATGTATTTTGGCAGTATCTGTGGATCCACTGTTCTTTTATGTTCCTGTCATTAACAAAACCTCAAACTGTCTTGGTATTGATAGAAAGCTGGCGATTATAGTGACCACGTTGCGGACAATTATTGATGTTTTCTATCTTATTCATATGGCTCTCCAATTCCGGACAGCTTATATTGCTCCATCATCTCGGGTGTTTGGGAGAGGTGAACTTGTGATTGATCCTGCACAAATAGCGAAGCGATACTTGCGGCGGTATTTCATCATTGATTTGATTTCTGTGCTACCCCTTCCACAGATTGTGGTTTGGAGATTTCTTCAGAGGTCAAAAGGTTCAGATGTATATGTGACAAAACAGGCCCTTCTTTTAATCGTGTTCCTTCAATATATCCCGAGATTTTTTAGAATGTTACCTTTGGCTTCAGAATTGAAAAGGACAACAGGCGTATTTGCAGAAACTGCTTGGGCGGGTGCTGCATGTTATTTGTTATTATATATGCTTGCTAGTCATATAGTTGGAGCATTATGGTATTTATTAGCCGTGGAACGCAATGATACGTGTTGGCAGAAGTTTTGTAATGGGGTCTGCACGAAAGAATTCTTATATTGTGGTAACCAGGACATGGAAGGTTACGCAACTTGGAACAAGACAGGACTGGGTGTCCTTCAGTCAAATTGCAAACCTGCTGATGAGAATGATCAGTTTGATTTTGGAATCTTTCAACAGGCCTTGTCCTCTGGTATTGCCTCATCCAAGGATTTTATAGCCAAATATTGTTACTGTCTATGGTGGGGCCTACAAAACTTAAGTACGCTTGGGCAGGGGCTGCAAACAAGCACCTATCCGGGTGAAGTGATATTTTCTATAGCATTGGCTGTACTTGGTCTCATCCTCTTTGCACTTCTAATTGGCAACATGCAGACTTATCTTCAATCTCTAACTATAAGGCTTGAGGAAATGAGGGTGAAAAGGCGAGATTCTGAGCAGTGGATGCATCACCGCTTGCTGCCGCAGGAACTTCGGGAGAGGGTCCGACGTTATGATCAGTACAAGTGGTTGGAGACGCGTGGGGTGGATGAACAGAGTTTGGTACAAACTCTACCGAAGGATCTTAGAAGAGATATTAAGCGCCATCTTTGTCTGGCTTTAGTAAGGAGGGTTCCTCTGTTTGAAAGCATGGATGAGAGGCTGCTCGATGCTATCTGTGAGCGGTTGAAACCGTGTTTGTTTACGGAGTACACTTACATTGTCCGTGAAGGTGATCCAGTTGATGAGATGCTTTTCATTATACGTGGTCGGCTTGAGAGTGTGACTACAGATGGTGGGCGGAGTGGATTTTTCAACCGTACCTTCCTAAAAGAAGGCGACTTTTGTGGTGAAGAGCTTTTGACCTGGGCTCTGGATCCGAAATCTGGTTCGAACCTTCCTTCCTCTACACGGACAGTAAAGGCTATTACAGAGGTCGAGGCTTTCGCCCTCGTTGCTGAAGAGTTGAAATTCGTGGCCAGTCAGTTCAGGCGTCTTCACAGTAGGCAGGTGCAACATACCTTCCGATTCTACTCGCAGCAGTGGAGGACCTGGGCTGCTTGCTTCATCCAAGCAGCATGGCGTCGGTATTCCAAGAGAAAGTCTATGGAACTTCGTCAAAAGGAAGAAGCTGCAGCGGAAGAATCCGAGGGATCTCAAACTGCCACGAGCGGAGGCTCTTATAGCATTCGTGCAACTTTCTTAGCTTCCAAGTTTGCTGCAAATGCTCTCCGGGGCGTTCAGCGATATCGCAACGCCAAGAGTGCTCAGGAGTTGATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTAGCGCTGATGATGCAGATTGA 2202 44.28 MFDCGYKSQLMGGQREKFVRLDDLDSRLSSPSDGGMRRCGFNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLKFGVSRAVFPEDLKESKKKIFDPQDKLLLFLNKLFVISCILAVSVDPLFFYVPVINKTSNCLGIDRKLAIIVTTLRTIIDVFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDLISVLPLPQIVVWRFLQRSKGSDVYVTKQALLLIVFLQYIPRFFRMLPLASELKRTTGVFAETAWAGAACYLLLYMLASHIVGALWYLLAVERNDTCWQKFCNGVCTKEFLYCGNQDMEGYATWNKTGLGVLQSNCKPADENDQFDFGIFQQALSSGIASSKDFIAKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVQTLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGSNLPSSTRTVKAITEVEAFALVAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKSMELRQKEEAAAEESEGSQTATSGGSYSIRATFLASKFAANALRGVQRYRNAKSAQELIKLQKPPEPDFSADDAD 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30492069 30504896 + MC08g2157 Mch8g2727 696348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2727 733 Pfam Cyclic nucleotide-binding domain 529 614 IPR000595 -
Mch8g2727 733 Pfam Ion transport protein 112 430 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch8g2727 733 Gene3D Helix hairpin bin 432 495 - -
Mch8g2727 733 ProSiteProfiles IQ motif profile. 640 669 - -
Mch8g2727 733 FunFam Cyclic nucleotide-gated ion channel 1 431 495 - -
Mch8g2727 733 CDD CAP_ED 504 635 IPR000595 -
Mch8g2727 733 ProSiteProfiles cAMP/cGMP binding motif profile. 504 588 IPR000595 -
Mch8g2727 733 Gene3D Jelly Rolls 502 622 IPR014710 -
Mch8g2727 733 SUPERFAMILY Voltage-gated potassium channels 101 426 - -
Mch8g2727 733 SMART cnmp_10 504 635 IPR000595 -
Mch8g2727 733 SUPERFAMILY cAMP-binding domain-like 433 624 IPR018490 -
Mch8g2727 733 FunFam Cyclic nucleotide-gated ion channel 1 502 620 - -
Mch8g2727 733 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 83 721 - -
Mch8g2727 733 Gene3D - 111 429 - -
Mch8g2727 733 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch8g2727 733 PRINTS EAG/ELK/ERG potassium channel family signature 467 474 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch8g2727 733 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch8g2727 733 PRINTS EAG/ELK/ERG potassium channel family signature 373 390 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch8g2727 733 PRINTS EAG/ELK/ERG potassium channel family signature 417 426 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch8g2727 733 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Mch8g2727 733 PRINTS EAG/ELK/ERG potassium channel family signature 399 410 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0079 Mch-Chr10:445364 Mch8g2727 Mch-Chr8:30492069 4.40E-139 dispersed
Mch5g0470 Mch-Chr5:3180785 Mch8g2727 Mch-Chr8:30492069 1.91E-202 dispersed
Mch8g1531 Mch-Chr8:11952081 Mch8g2727 Mch-Chr8:30492069 1.65E-230 dispersed
Mch8g1592 Mch-Chr8:12749781 Mch8g2727 Mch-Chr8:30492069 0 dispersed
Mch8g2727 Mch-Chr8:30492069 Mch9g0659 Mch-Chr9:4957895 1.06E-220 dispersed
Mch8g2727 Mch-Chr8:30492069 Mch6g1858 Mch-Chr6:21088339 5.63E-262 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2727 K05391 - csv:101219180 1375.92