Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2775 ATGGAAGAGCCTCTGTTGCAAAAAGTGTGCGCCCTGTACCGCCAAATCTCGAGCCTTGAGAGCCTGAAGCCGTCCAAAAATGTCGACACTCTTTTCACCCAACTGGTGGTCACGTGCTGCCCCCCTGCCCCTGGCCTCGACATCTCCTCCCTCCCACACTCCCTTCAGTCCATGCGAGCCCACCTCATCCGCCTCTGCGCCAGCGCCGAGGCGCTCTTGGAGGTTCACTTCTCTTCCATCCTCGCCTCCTCCTTCCCCAACCCCATTCACAATCTCTCCATCTTCCCCTACTACTCTAACTACTTGAAGCTCTCTCTTCTCGAGTTCGATATTCTCCGCTCTCATTGCCGCCGTCCCCCCGCTAGCGTCGCGTTTGTTGGCTCCGGCCCCCTCCCGCTCTCCTCCATTGTCCTGGCCTCCGCTCACATGAAAGGGACGATTTTTCATAACTTTGATATTGACCCGATTGCGAACTCGATGGCGGGTCGATTGGTCGGGTCGGACCCAGACCTATCGCAGCGGATGATGTTTCACACGGCCGATGTGATGGAGGTGACAACAGGACTTGGGGAGTACGAGGTGGTGTTTTTGGCGGCGTTAGTGGGAGTGGAGGAGGAGGAGAAGGGGAAGGTTTTGAGGCATTTGGGGAAGCATATGGCGCCCGGGGCTTATTTGATGCTGAGGAGTGCGCATGGCGCTAGGGCTTTTTTGTACCCTGTTGTTGACGTTTGTGAGGTTGAAGCTTCTGGATTCGAGGTTCTGTCTGTGTTTCATCCTACTGATGAAGTTATAAACTCTGTTGTTATTGCTAGAAAGCTGTTTGATCTCGTCCCAACTACTGGAGGAAGCTCCAGTAACGAAGACGAAGATGATCAAAACGACGATGATGATACTGATGACGAGAAGCAGGGTATTTTGAACAATACTCCTATTGTGTTGACTGAGAAGTACTCTGGGTTCAAGGCTTTTAGTCCTATGATTGAAGAACTTGCCATGGAGGAACAACTTTCTTGA 1014 52.56 MEEPLLQKVCALYRQISSLESLKPSKNVDTLFTQLVVTCCPPAPGLDISSLPHSLQSMRAHLIRLCASAEALLEVHFSSILASSFPNPIHNLSIFPYYSNYLKLSLLEFDILRSHCRRPPASVAFVGSGPLPLSSIVLASAHMKGTIFHNFDIDPIANSMAGRLVGSDPDLSQRMMFHTADVMEVTTGLGEYEVVFLAALVGVEEEEKGKVLRHLGKHMAPGAYLMLRSAHGARAFLYPVVDVCEVEASGFEVLSVFHPTDEVINSVVIARKLFDLVPTTGGSSSNEDEDDQNDDDDTDDEKQGILNNTPIVLTEKYSGFKAFSPMIEELAMEEQLS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30811818 30813119 - MC08g2197 Mch8g2775 696396

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2775 337 Pfam Nicotianamine synthase protein 3 273 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Mch8g2775 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 107 252 IPR029063 -
Mch8g2775 337 MobiDBLite consensus disorder prediction 287 301 - -
Mch8g2775 337 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Mch8g2775 337 PANTHER NICOTIANAMINE SYNTHASE 3 3 277 IPR004298 GO:0030410(InterPro)|GO:0030418(InterPro)
Mch8g2775 337 MobiDBLite consensus disorder prediction 280 309 - -
Mch8g2775 337 Gene3D Vaccinia Virus protein VP39 6 273 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2775 K05953 - - csv:101203651 449.129
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g2775 Mch-Chr8:30811818 Mch8g2776 Mch-Chr8:30820127 3.24E-112 tandem
Mch6g2772 Mch-Chr6:29185304 Mch8g2775 Mch-Chr8:30811818 1.01E-114 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g2775 . 2 272 Nicotianamine Synthase Gene Family AT1G09240 62.9 4.8e-95 344.7
Mch8g2776 . 1 272 Nicotianamine Synthase Gene Family AT1G09240 61.6 1.9e-91 332.8
Mch6g2772 . 1 272 Nicotianamine Synthase Gene Family AT1G09240 57.8 5.6e-88 321.2
Mch8g2775 . 2 273 Nicotianamine Synthase Gene Family AT1G56430 62.6 6.1e-98 354.4
Mch8g2776 . 3 272 Nicotianamine Synthase Gene Family AT1G56430 62.0 2.4e-94 342.4
Mch6g2772 . 3 272 Nicotianamine Synthase Gene Family AT1G56430 59.7 5.9e-93 337.8
Mch8g2775 . 5 273 Nicotianamine Synthase Gene Family AT5G04950 59.0 5.1e-89 324.7
Mch8g2776 . 1 272 Nicotianamine Synthase Gene Family AT5G04950 56.7 2.4e-86 315.8
Mch6g2772 . 1 272 Nicotianamine Synthase Gene Family AT5G04950 54.3 3.8e-84 308.5
Mch8g2775 . 5 273 Nicotianamine Synthase Gene Family AT5G56080 59.3 3.5e-90 328.6
Mch8g2776 . 1 272 Nicotianamine Synthase Gene Family AT5G56080 56.9 9.0e-86 313.9
Mch6g2772 . 1 272 Nicotianamine Synthase Gene Family AT5G56080 56.4 1.5e-85 313.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125