Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2794 ATGGCGTCAAGGAATCGGACTTTGCTTTTTAGGAAATACAGGGACGCGTTGAGAAGTGTGAGGGCTCCTACCAGCTCTTCGCCAGTTTCGGCATCGCCATCGACTAGTTCTGGCGCTGGTGGTCCGGTGATTGAATTGGTGAGCTCGTCGTTGCTGCATCCGAATCGGACTTATGCCCCCTTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCATACCGTGGGTCTGCCTCCGGCTTGGGTCGATGTATCCGAAGAAATAGCTGCAAATGTGCAACGTGCACGAGCAAAGATGACAGAGTTAGCTAAAGCTCATGCGAAGGCTTTGATGCCTTCGTTTGGAGATGGTAAAGAAGATCAAAGGTTAATTGAGGCTCTCACGCAAGAAATAACACATTTAATTAAGAAATCGGAGAAGGGACTACAGAGACTCTCTGCGGCTGGTCCTTCTGAGGATTCCAATATCAGAAAAAACGTTCAGCGAGCTCTTGCCACCGACCTTCAGAACCTTTCCATGGAGCTACGCAAGAAACAGTCAACTTATCTAAAGCGCCTACAGCAGCAAAAAGAGGAAGGTCAAGATAGGATTGATATAGAGATGAATCTAAACGGAAATCGATCAAGACTGGAGGACGATGATTTGGAAAACATGGTATTTAATGAGCATCAGATGGCTAAGCTTCGAAAGAGTGAAGCATTTACTGCTGAAAGAGAGAGAGAAATCCATCAAGTTGTCGAATCTGTGAATGAGCTCGCTCAGATCATGAAGGATCTATCAGTACTTGTCATAGACCAGGGCACAATTATTGATAGAATAGATTACAATATTCAAAATGTAGCGACAACTGTGGAGGAGGGCCTTAAGCAACTGCAGAAGGCAGAGAGAACACAGAAACAGGGGGGGATGGTAATGTGCGCGTCCGTGCTCATTATCATGTGCTTTGTCATGTTGGTTCTCTTGATCCTAAAAACCATACTGTTTTGA 990 45.56 MASRNRTLLFRKYRDALRSVRAPTSSSPVSASPSTSSGAGGPVIELVSSSLLHPNRTYAPLSTEDPGNSSKGAHTVGLPPAWVDVSEEIAANVQRARAKMTELAKAHAKALMPSFGDGKEDQRLIEALTQEITHLIKKSEKGLQRLSAAGPSEDSNIRKNVQRALATDLQNLSMELRKKQSTYLKRLQQQKEEGQDRIDIEMNLNGNRSRLEDDDLENMVFNEHQMAKLRKSEAFTAEREREIHQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVEEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKTILF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30939086 30943190 - MC08g2214 Mch8g2794 696415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2794 329 SMART SynN_4 73 188 IPR006011 GO:0016020(InterPro)
Mch8g2794 329 Gene3D - 79 287 - -
Mch8g2794 329 ProSitePatterns Syntaxin / epimorphin family signature. 239 278 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Mch8g2794 329 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 233 295 IPR000727 -
Mch8g2794 329 MobiDBLite consensus disorder prediction 20 42 - -
Mch8g2794 329 CDD SNARE_syntaxin16 237 294 - -
Mch8g2794 329 PANTHER SYNTAXIN 89 313 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Mch8g2794 329 FunFam Syntaxin-43 79 287 - -
Mch8g2794 329 SUPERFAMILY t-snare proteins 78 288 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Mch8g2794 329 SMART tSNARE_6 228 295 IPR000727 -
Mch8g2794 329 Coils Coil 184 204 - -
Mch8g2794 329 Pfam SNARE domain 269 321 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1612 Mch-Chr11:14667505 Mch8g2794 Mch-Chr8:30939086 1.39E-59 dispersed
Mch8g2794 Mch-Chr8:30939086 Mch9g0690 Mch-Chr9:5190443 4.25E-132 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2794 K08489 - csv:101207998 559.296