Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2907 ATGGGATGTATAATTAGCCGAGAGGTAGCTTCTAGAAACTCACCAGATTCCGAGGATAAGAAGGAGAAGAGTTCTGAATGTGGTGACGATTTGGAGAGGAAGGAAGCTGGTGTGGCTGACGCTGTTGATGTCACTCAGAAGGAAGGGCATGGCCATGGGGCCCAGACTTTGACAAAAGAGCAGAGAAGAAAGTCGAAACCCAACCCCGGACCGAGAAATTTGCCAAAGCAATCACAGGGGGAGCAGGTGGCGGCTGGATGGCCTTCTTGGCTCACAGCAGTTTGTGGGGAGGCACTCAATGGTTGGGTTCCGAGGAAGGCTGATACATTTGAGAAGATTGATAAGATTGGACAAGGGACATATAGTAATGTGTACAAAGCGAAAGATATATTGACAGGTAAAGTTGTTGCGCTGAAGAAGGTTCGTTTTGACAATTTAGAGCCAGAAAGTGTAAGATTTATGGCTAGAGAGATTCTCATTTTGCGACGCTTAGATCATCCTAATGTTGTAAAGTTAGAGGGTTTGGTTACATCAAGAATGTCATGTAGTTTGTACCTTGTGTTTGAGTACATGGAGCATGATTTAGCTGGACTTGCTGCAAATCCATCCATTAAGTTTACAGAGCCGCAGGTTAAATGTTTCATGCAACAACTGCTATCGGGACTCGAGCACTGTCACAGCCATTGGGTGCTTCATCGCGATATTAAGGGTTCAAATCTTCTTATTGATGGGGGAGGGATGCTTAAGATTGCTGACTTTGGATTAGCTAGTTTCTTTGATCCAAAACATAAGCACCCATTGACTAATCGTGTTGTTACCTTATGGTATCGGTCTCCCGAGCTTCTACTCGGTACAACTCATTATGGCGTAGGTGTCGACCTCTGGAGTGCAGGTTGTATTTTAGCAGAGTTATTAGCTGGGAGGCCCATAATGCCTGGCCGTACAGAGGTTGAACAACTCCATAAGATATTCAAGCTGTGTGGCTCACCTTCAGATGAATATTTAAAGAGGGCAAAGTTGCCAAATGCAGCCTTATTTAGACCCCGAGAACCTTACAGGAAATGCATAAAAGAGACTTTTAAAGATTTCCCACCATCATCATTTCCTCTTATGGAAACACTTCTTGCAATCGATCCCGCTGAGAGAATGACTGCTGCTGATGCGCTGAAGAGCGAGTTTTTCACCACAGAACCTTTTGCTTGTGAACCTTCTAGCCTCCCCAAATATCCACCTAGTAAGGAGATCGATGCTAAACGACGAGATGAAGAGGCACGGAGACAAAGAGCAGCTAGTAAATTGCAGAATGATCGGGTAAAGAAGACACGCACACGTAATCGTGCTGGTAGGGCCATTCCTGTTCAAGGAGCCAACGCAGAACTCCAGTCAAATATCGACAGACGACGTCTAATTACTCACGCCAATGCAAAGAGCAAGAGCGAAAAGTTCCCTCCTCCACATCAGGATGGAGCACTCGGATTCACATTGGGATATTCACGTCACATTGATCCTGCTGTTGTTCCTTCTGATGTCCCATTTAGTTCCACGTCGTTCGGTTATCCAACCGATTTGGACCGAGCCTGGTCCGGTCCATTGGTTGAGTCCTCTGACCTTGGTGCTCAAAGGCAGAAGCATTTGGGAGGTGATGCAAGAGAACAACAATCAACAATTAGCCAATCCTCAATTAAAGGAAAAAAGATGGCATGA 1704 45.48 MGCIISREVASRNSPDSEDKKEKSSECGDDLERKEAGVADAVDVTQKEGHGHGAQTLTKEQRRKSKPNPGPRNLPKQSQGEQVAAGWPSWLTAVCGEALNGWVPRKADTFEKIDKIGQGTYSNVYKAKDILTGKVVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTEPQVKCFMQQLLSGLEHCHSHWVLHRDIKGSNLLIDGGGMLKIADFGLASFFDPKHKHPLTNRVVTLWYRSPELLLGTTHYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSDEYLKRAKLPNAALFRPREPYRKCIKETFKDFPPSSFPLMETLLAIDPAERMTAADALKSEFFTTEPFACEPSSLPKYPPSKEIDAKRRDEEARRQRAASKLQNDRVKKTRTRNRAGRAIPVQGANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAVVPSDVPFSSTSFGYPTDLDRAWSGPLVESSDLGAQRQKHLGGDAREQQSTISQSSIKGKKMA 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31847432 31853476 - MC08g_new0605 Mch8g2907 696528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2907 567 ProSiteProfiles Protein kinase domain profile. 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2907 567 PANTHER CELL DIVISION PROTEIN KINASE 109 394 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Mch8g2907 567 MobiDBLite consensus disorder prediction 549 567 - -
Mch8g2907 567 FunFam probable serine/threonine-protein kinase At1g54610 193 434 - -
Mch8g2907 567 MobiDBLite consensus disorder prediction 1 84 - -
Mch8g2907 567 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Mch8g2907 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch8g2907 567 MobiDBLite consensus disorder prediction 523 567 - -
Mch8g2907 567 Gene3D Transferase(Phosphotransferase) domain 1 193 434 - -
Mch8g2907 567 FunFam probable serine/threonine-protein kinase At1g54610 97 192 - -
Mch8g2907 567 Pfam Protein kinase domain 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2907 567 SMART serkin_6 110 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch8g2907 567 MobiDBLite consensus disorder prediction 412 441 - -
Mch8g2907 567 MobiDBLite consensus disorder prediction 474 494 - -
Mch8g2907 567 MobiDBLite consensus disorder prediction 403 444 - -
Mch8g2907 567 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524(InterPro)
Mch8g2907 567 SUPERFAMILY Protein kinase-like (PK-like) 104 399 IPR011009 -
Mch8g2907 567 MobiDBLite consensus disorder prediction 12 67 - -
Mch8g2907 567 CDD STKc_CDK9_like 110 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g0091 Mch-Chr8:506886 Mch8g2907 Mch-Chr8:31847432 7.41E-70 dispersed
Mch8g2907 Mch-Chr8:31847432 Mch9g2347 Mch-Chr9:23460276 2.71E-69 dispersed
Mch6g1637 Mch-Chr6:18103025 Mch8g2907 Mch-Chr8:31847432 1.37E-293 transposed
Mch7g1086 Mch-Chr7:14888068 Mch8g2907 Mch-Chr8:31847432 3.07E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77639 PF00069 Pkinase 1.30E-66 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2907 K08819 - csv:101217497 1029.24