Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch8g2937 | TTGAGATACAGGAAAAATGATGAAATGGTGATCGTAAACCATGAGGAACGATCGTCTATGGCAAAAAATCACAAACGGCGGTGGAGGATGGCCTTCGCGGCGATTTGTTTCACCAGAGTTCTCATTTCTCTGTCGAAGAAAGTCGGCGGCCGGCGCAAGTCCGGCGGCCTCTTGCGCTCGCTCTCTTACGTTGCTGTTGATGTGCCACTGAACGATGGTGATAGCACGGATTGCGGCGAGCTGTCGTGCATGGCGGCGTTTTCCGACGTCGATCGGGAAGTTCTGAGCGAGATGGTGAGGGAGAAGGATTCTGATTGTTTGGATCGATTTGGAGGTGTTGAAGGATTGGCAGCTCTTCTGGAAACCAGTGCCAATGGCGGAATTAGTGCAACTGATGATGACCTAATTGCCAGAAGAAACGCTTTCGGAGCCAACACATATCCGAAGCTCCATGGCAGAAGCTTCCTCAGTTTCGTGATCGAAGCGTTCAAGGACACTACGATTATCATTCTCTTGATCTGTGCAGCGCTTTCTTTAGGATTTGGAATTAAGCAGCACGGTTGGGACGATGGATGGTACGACGGCGGCAGCATTGTGATCGCCATATTTCTGGTGGTGGTGGTTTCCGCTGTGAGCAACTTCAACCAGTCGAGACAGTTCGAGAAGCTTTCCGACGAGAGAGACGACATCAAAATTGATGTCGTGAGAGCCGGTCGACGAAAACCAGTTTCGATATTCGAGGTCGTGGTTGGAGATGTCGTGCGGTTGAAAATCGGCGATCAGGTTCCGGCCGACGGAGTGTTTCTCGAGGGGCATTCGCTGAAAGTCGACGAGTCGAGCATGAACGGAGAGAGCGAACACGTTGAAGTAAATCTAGGGACTAATCCGTTTCTGCTATCGGGAACAAAAGTGAGCGATGGATTTGGTGTGATGATGGTTACTTCTGTGGGAATGAACACGGCCTGGGGAGAGATGATGAGCTCAATAAGGGAGGAAGTTAATGAGCTTACTCCATTACAAGCGTGCTTGAACAAGATGACCGCCGTCGTTGGGAAGCTCGGGCTGACGGTCGCCGTGCTTGTTCTTCTTGTTCTATTGCTTCGCTACTTCACCGGGAGCACCAAGGAGTTCAATGGAAGCAAGACATCATTCAACAGCGTGATGAATGCGGTTCTCGGCATGGTTGCTGCTGCTGTTACGATCGTTGTGGTGGCGATTCCCGAAGGTTTGCCTCTTGCTGTTACTTTAACTTTAGCTTACTCCATGAAAAAGATGATGGCGGATAATGCAATGGTTAGAAAACTCTCCGCTTGTGAGACCATGGGCTCCGCTACAACAATTTGTACGGACAAAACAGGCACCCTCACTTTGAATGAGATGAAAGTGACTGAGTTCTGGATTGGGGCAGATGAAATAGACAGATATTCCTCTTCTACGATTGAAGCCAAAGTTGTTGAAGTTCTGCACCAAGCAATTGGACTGAACACAGCTGGTAGTGTTCAAAGACAGCCAACTTCTTCTTCATTGCTACCAGAAATATTCGGGAGTCCGACCGAGAAAGCGATACTATCTTGGGCGGTTTTTGACCTGGATTTGAACTTAGATGAACTGAAGAAGCATCATGAGATAATCCAAGTGGAGACTTTCAATTCAGAGAAAAAGAGGAGCGGGGTTTTGACGAGACAATACGGTGAGAGGCTTATACATACACACTGGAAGGGAGCGGCAGAGATGATATTAGCCATGTGTTCGTATTGTTACGAGAGACAAGGAACAGTTAGAGCCATCGATGATGAAGGAAGAAGGCGCCTTGTTGCTATAATCACAACCATGGCAGAGAAAAGTCTGCGATGCATAGCCTTTGCCCACAAGACGAATGGAGAAGATCAAAATCTAGAGACTCCTGCAAAACTCGACGAATCGGGATTGACATTACTGGGGATTGTGGGTTTGAAGGATCCTTGCAGGCCAGGAGTTAGAGCAGCGGTAGAATCATGTAGAGCTGCTGGAGTGAACATAAAAATGGTAACAGGTGATAATCTGCACACAGCAACAGCCATAGCAATTGAATGCGGTATACTTGATCTCAATGATGATTTGAGTAGTGAAGTTGTAGTAGAGGGCAAAGAATTTAGAAACTACACACCTGAGGAGAGATTGGAAAGGGTTGGTAGAATCCGAGTGATGGCTAGATCTTCCCCATTCGACAAACTTCTCATGGTACAGTGCTTGAAGAATCAGGGCCATGTGGTGGCAGTCACTGGTGATGGCACAAACGACGCCCCTGCTCTTCACGAGGCAGACATTGGCCTTTCCATGGGGATTCAAGGAACTGAAGTGGCAAAGGAGAGCTCGGACATAGTCATCTTGGACGATAACTTCACGTCAGTAGTGACCGTCTTGAAATGGGGAAGATGCGTTTACAACAACATTCAGAAGTTCATTCAATTTCAGCTAACCGTGAATGTTGCTGCACTTGTTGTCAACTTCATCGCTGCCGTCTCTTCCGGTAAAGTCCCCCTAACTGCAGTTCAGCTACTGTGGGTGAACCTCATAATGGACACAGTGGGAGCTTTAGCCTTAGCCACAGAGCGACCCACCAACGATCTCATGCTGAAAACGCCAGTCGGGAGATCCGAGCCATTGGTAACCAAAGTCATGTGGAGGAACCTCATTGCTCAGGCTGTGTATCAGGTGACAGTCCTGCTGGTTTTGGAATTCAAAGGAAGATCCATCTTCAATGTGAATGAAAGGGTAAAAAGCACGCTCATCTTCAACACTTTTGTTCTGTGCCAAATCTTCAATGAGTTCAATGCAAGGAAGCTGGAGAAGAAGAACATATTCGAAGGATTACACAGAAGCAAGCTCTTTTTGGCAATAATTGCAATAACCATTGCTTTTCAAGTGATAATGGTGGAGCTTCTGGGAAGGTTTGCCAATACTGAGAGGTTAAATTGGAGCCAGTGGGGATCATGCATTGGCATTGCTGCTTTGTCTTGGCCAATTGGATGGGTCTCCAAGTTAATACCAGTTTCTGCCATGGAATTTCCAAGGAGA | 3057 | 47.46 | LRYRKNDEMVIVNHEERSSMAKNHKRRWRMAFAAICFTRVLISLSKKVGGRRKSGGLLRSLSYVAVDVPLNDGDSTDCGELSCMAAFSDVDREVLSEMVREKDSDCLDRFGGVEGLAALLETSANGGISATDDDLIARRNAFGANTYPKLHGRSFLSFVIEAFKDTTIIILLICAALSLGFGIKQHGWDDGWYDGGSIVIAIFLVVVVSAVSNFNQSRQFEKLSDERDDIKIDVVRAGRRKPVSIFEVVVGDVVRLKIGDQVPADGVFLEGHSLKVDESSMNGESEHVEVNLGTNPFLLSGTKVSDGFGVMMVTSVGMNTAWGEMMSSIREEVNELTPLQACLNKMTAVVGKLGLTVAVLVLLVLLLRYFTGSTKEFNGSKTSFNSVMNAVLGMVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADNAMVRKLSACETMGSATTICTDKTGTLTLNEMKVTEFWIGADEIDRYSSSTIEAKVVEVLHQAIGLNTAGSVQRQPTSSSLLPEIFGSPTEKAILSWAVFDLDLNLDELKKHHEIIQVETFNSEKKRSGVLTRQYGERLIHTHWKGAAEMILAMCSYCYERQGTVRAIDDEGRRRLVAIITTMAEKSLRCIAFAHKTNGEDQNLETPAKLDESGLTLLGIVGLKDPCRPGVRAAVESCRAAGVNIKMVTGDNLHTATAIAIECGILDLNDDLSSEVVVEGKEFRNYTPEERLERVGRIRVMARSSPFDKLLMVQCLKNQGHVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFTSVVTVLKWGRCVYNNIQKFIQFQLTVNVAALVVNFIAAVSSGKVPLTAVQLLWVNLIMDTVGALALATERPTNDLMLKTPVGRSEPLVTKVMWRNLIAQAVYQVTVLLVLEFKGRSIFNVNERVKSTLIFNTFVLCQIFNEFNARKLEKKNIFEGLHRSKLFLAIIAITIAFQVIMVELLGRFANTERLNWSQWGSCIGIAALSWPIGWVSKLIPVSAMEFPRR | 1019 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 32100329 | 32103385 | - | MC08g2325 | Mch8g2937 | 696558 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch8g2937 | 1019 | SUPERFAMILY | Calcium ATPase, transduction domain A | 232 | 328 | IPR008250 | - | |
| Mch8g2937 | 1019 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 111 | 1011 | IPR023298 | - | |
| Mch8g2937 | 1019 | Gene3D | - | 458 | 654 | IPR023299 | GO:0000166(InterPro) | |
| Mch8g2937 | 1019 | NCBIfam | HAD-IC family P-type ATPase | 725 | 836 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g2937 | 1019 | NCBIfam | HAD-IC family P-type ATPase | 391 | 496 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g2937 | 1019 | FunFam | Calcium-transporting ATPase | 649 | 799 | - | - | |
| Mch8g2937 | 1019 | Gene3D | - | 445 | 799 | IPR023214 | - | |
| Mch8g2937 | 1019 | PRINTS | P-type cation-transporting ATPase superfamily signature | 647 | 658 | - | - | |
| Mch8g2937 | 1019 | PRINTS | P-type cation-transporting ATPase superfamily signature | 277 | 291 | - | - | |
| Mch8g2937 | 1019 | PRINTS | P-type cation-transporting ATPase superfamily signature | 448 | 462 | - | - | |
| Mch8g2937 | 1019 | PRINTS | P-type cation-transporting ATPase superfamily signature | 778 | 790 | - | - | |
| Mch8g2937 | 1019 | PRINTS | P-type cation-transporting ATPase superfamily signature | 754 | 773 | - | - | |
| Mch8g2937 | 1019 | PRINTS | P-type cation-transporting ATPase superfamily signature | 669 | 679 | - | - | |
| Mch8g2937 | 1019 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 454 | 659 | IPR023299 | GO:0000166(InterPro) | |
| Mch8g2937 | 1019 | SFLD | Haloacid Dehalogenase | 430 | 807 | - | - | |
| Mch8g2937 | 1019 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 450 | 456 | IPR018303 | - | |
| Mch8g2937 | 1019 | Pfam | E1-E2 ATPase | 231 | 426 | - | - | |
| Mch8g2937 | 1019 | PRINTS | H+-transporting ATPase (proton pump) signature | 786 | 811 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g2937 | 1019 | PRINTS | H+-transporting ATPase (proton pump) signature | 754 | 770 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g2937 | 1019 | PRINTS | H+-transporting ATPase (proton pump) signature | 604 | 622 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Mch8g2937 | 1019 | PANTHER | CATION TRANSPORTING ATPASE | 85 | 1012 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Mch8g2937 | 1019 | FunFam | Calcium-transporting ATPase | 771 | 1013 | - | - | |
| Mch8g2937 | 1019 | SUPERFAMILY | HAD-like | 446 | 859 | IPR036412 | - | |
| Mch8g2937 | 1019 | Pfam | Cation transporting ATPase, C-terminus | 839 | 1009 | IPR006068 | - | |
| Mch8g2937 | 1019 | FunFam | Calcium-transporting ATPase | 207 | 330 | - | - | |
| Mch8g2937 | 1019 | Gene3D | - | 133 | 330 | - | - | |
| Mch8g2937 | 1019 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 96 | 1011 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Mch8g2937 | 1019 | SFLD | p-type atpase | 430 | 807 | IPR044492 | - | |
| Mch8g2937 | 1019 | Gene3D | - | 161 | 1007 | - | - | |
| Mch8g2937 | 1019 | SMART | Cation_ATPase_N_a_2 | 109 | 183 | IPR004014 | - | |
| Mch8g2937 | 1019 | Pfam | haloacid dehalogenase-like hydrolase | 446 | 768 | - | - | |
| Mch8g2937 | 1019 | Pfam | Cation transporter/ATPase, N-terminus | 111 | 178 | IPR004014 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch4g0331 | Mch-Chr4:2076189 | Mch8g2937 | Mch-Chr8:32100329 | 2.00E-79 | dispersed | |
| Mch4g0333 | Mch-Chr4:2084099 | Mch8g2937 | Mch-Chr8:32100329 | 1.44E-65 | dispersed | |
| Mch8g2937 | Mch-Chr8:32100329 | Mch9g0154 | Mch-Chr9:1193848 | 0 | dispersed | |
| Mch3g0360 | Mch-Chr3:5900585 | Mch8g2937 | Mch-Chr8:32100329 | 2.16E-108 | transposed | |
| Mch8g2937 | Mch-Chr8:32100329 | Mch9g0907 | Mch-Chr9:7172631 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch8g2937 | K01537 | - | csv:101218531 | 1565.82 |