Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch8g2977 ATGGAACCCAATGAAAACCAGCTCAGCTCCTACTTCCACCACCATCAGCACCACCATCAAAGTCCCACCACCACCACCACATCGCCGACCAATGGACTTTTACCCCCCACCCACCACCTCTCCTCCACCGCCGCCGCCGCAGACGGCGGCTCTCACGGCGTCTACCCTCACTCCGTGCCCTCCGCCGCGGTCTCCTCCTCGCCCCTCGAGCCCGCTCGCCGGAAGAGGGGCCGCCCCAGGAAGTACGGCACTCCCGAGGAAGCTTTAGCTGCGAAGAAAGCTGCTACGGCGTCGTCTCACTCTTCCTCCTCCAAGGCCAAGAGGGACCACCACGCCTCTTCCCTTAATGCTCTCTCCGCTTCTTCTTCTTCCTTCTCTGCCCCTTCCAAGAAATCCCAGTTGGCAGCACTTGATGTAGGTAATGCAGGCCAAAGTTTTGCACCACATGTTATTAATGTGGCAGCTGGTGAGGATGTTGGCCAGAAAATTATGCTGTTTATGCAGCAATGCAAGCGGGAAATCTGTATCCTTTCTGCTTCTGGTTCGATCTCCAATGCATCTCTCCGTCAGCCAGCCACATCCGGAGGCAATATTACGTATGAGGGTCGTTTTGAGATTGTTTCATTATGCGGATCTTATGTACGTACTGACATCGGAGGAAAGACTGGTGGTCTTAGTGTATGTTTGTCTAGTTCTGATGGTCATATCATAGGAGGGGGAGTCGGTGGACCATTGAAGGCTGCTGGACCCGTGCAGGTTATTGTTGGTACTTTTGTGATCGACCCAAAGAAGGACGTTGGTGGTGGTGCAAAAGGTGACGCATCTGCTGGCAAGTTGCCCTCACCTGTTGGTGGGACGTCGATGTCGGGTCTACGCTATGGCTCGACCATCGACTCAGGAGGTAATCAAGTCAGGGGAAATGATGAACACCAAGGCATTGGGGAGGGTCATTTCTTGCTTCAGCCCCGGGGCGTGAATCTGACATCTCAGCGGCCCACAGACTGGAGGATGGGTCTGGATGCCACAAACAGTGCTTACGATTTGACAGGAAGAACAAGCCATCATTCTCCCGAAAACGGAGATTACGATCAGATTCCCGATTAA 1104 53.99 MEPNENQLSSYFHHHQHHHQSPTTTTTSPTNGLLPPTHHLSSTAAAADGGSHGVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKRDHHASSLNALSASSSSFSAPSKKSQLAALDVGNAGQSFAPHVINVAAGEDVGQKIMLFMQQCKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLCGSYVRTDIGGKTGGLSVCLSSSDGHIIGGGVGGPLKAAGPVQVIVGTFVIDPKKDVGGGAKGDASAGKLPSPVGGTSMSGLRYGSTIDSGGNQVRGNDEHQGIGEGHFLLQPRGVNLTSQRPTDWRMGLDATNSAYDLTGRTSHHSPENGDYDQIPD 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 32444426 32452052 - MC08g2360 Mch8g2977 696598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch8g2977 367 CDD DUF296 148 258 IPR005175 -
Mch8g2977 367 Pfam Plants and Prokaryotes Conserved (PCC) domain 148 258 IPR005175 -
Mch8g2977 367 Gene3D - 148 268 - -
Mch8g2977 367 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 36 283 IPR039605 GO:0003680(InterPro)
Mch8g2977 367 ProSiteProfiles PPC domain profile profile. 143 283 IPR005175 -
Mch8g2977 367 SUPERFAMILY AF0104/ALDC/Ptd012-like 144 259 - -
Mch8g2977 367 MobiDBLite consensus disorder prediction 346 367 - -
Mch8g2977 367 MobiDBLite consensus disorder prediction 269 289 - -
Mch8g2977 367 MobiDBLite consensus disorder prediction 21 38 - -
Mch8g2977 367 MobiDBLite consensus disorder prediction 1 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch8g1968 Mch-Chr8:21661907 Mch8g2977 Mch-Chr8:32444426 5.78E-49 dispersed
Mch8g2974 Mch-Chr8:32422099 Mch8g2977 Mch-Chr8:32444426 8.59E-22 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch8g2977 - - - 0.0